Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (273), Expect = 1e-28
 Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 8/362 (2%)

Query: 14  LSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGHRNT 73
           L M   I   +Y PA   +   F         +L+++ +  A G + WG+  D  G R T
Sbjct: 13  LMMFPQIVETLYSPALPHIAAGFDVPLALAGQTLSIYFLAFAFGVVCWGILCDHLGRRRT 72

Query: 74  LIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQLFA 133
           ++ GL ++ +A+    ++ +   LL +R + A G    +V+ Q M+   +  +   ++FA
Sbjct: 73  MLLGLGLYGIAAFAALWAPSFQWLLAMRALSAFGAAVGSVVTQTMLRDSFDGTALAKVFA 132

Query: 134 TIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEI--AEPKTTS 191
            +   +A+SP +    G LL    G+ ++F TL+LM ++L     L+  E   A  +   
Sbjct: 133 YMGMGIAISPVVGMLSGGLLTSLGGYPAVFFTLSLMAVLLYAVCLLRLPETRPATMQPLP 192

Query: 192 IAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQARDIGLSFIPQTIAF 251
           +    K L        N ++ A  +   F+Y    P +  +LG   +  G S I   I  
Sbjct: 193 LWALAKRLATDGNIWHNALLVAGFNVLLFSYYLQGPFVFQRLGLSTQAFGYSGIALAIGT 252

Query: 252 MVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAPFCLIAVANG 311
           +VG  + K  +Q+   +  L +L +L  L  A+    S+  L      L P  LI  A G
Sbjct: 253 LVGSAINKTLLQRGASQPRLLRLASLLALVGAVGVYLSETHLG----FLLPMVLIVAAFG 308

Query: 312 AMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQP--VTGIAIVLC 369
              P ++++AL   +     A  L   L   + +L  A+V+       P  +T + + L 
Sbjct: 309 IAIPNILSQALVEYRDQAGAAGALFGLLYYLLIALGLAMVSLAEQLGGPLLITSLLLSLA 368

Query: 370 TG 371
            G
Sbjct: 369 IG 370