Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (824), Expect = 2e-92
 Identities = 181/391 (46%), Positives = 253/391 (64%), Gaps = 18/391 (4%)

Query: 5   FFQLVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLA 64
           F  L+YL+ LSMLGFIATDMYLPAFK +ET+      Q+A SLT FL G+ALGQLL+G  
Sbjct: 7   FSFLIYLALLSMLGFIATDMYLPAFKAIETSLDASATQVASSLTFFLAGLALGQLLYGPL 66

Query: 65  SDKFGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYP 124
               G R +L+ GL++F  AS  +A S ++    + RF QA+G C+ +VIWQA+VI RY 
Sbjct: 67  VQAIGKRLSLVLGLVLFGAASLVIANSDSIAMFNVARFFQALGACSASVIWQAIVIDRYK 126

Query: 125 SSVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVST--GLQTN 182
           +S +QQ+F+ IMPLVALSPALAP LG  L ++  WHSIF  L  + ++L+++T   +++ 
Sbjct: 127 ASEAQQVFSNIMPLVALSPALAPILGAYLLEWQQWHSIFFILGGLSLLLILATLAWVESK 186

Query: 183 EIAEPKT-----------TSIAQDIK----GLLKSKTYLGNVMMFACASAAFFAYLTGMP 227
           E    K            T + + ++     +L S  YLGNV++F   SAAFF+YLT  P
Sbjct: 187 ESLNSKADEAISQQGSTDTQVQKSVRVSYLAMLASPRYLGNVLIFGACSAAFFSYLTLWP 246

Query: 228 EIMAQLGYQARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALF-TLSAAMIF 286
            +M Q GY+A+ IGLSFIPQT+ F++GGYL K  +++ G E+ L  ++ LF    A +  
Sbjct: 247 IVMEQHGYEAKAIGLSFIPQTVMFILGGYLSKLFIRRLGAEVTLTWVLLLFGACVAGIAL 306

Query: 287 VASQWTLSSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSL 346
           V   +  S+IWP+L+ F ++A ANGA YPIVVN AL   KQ+ A AAGLQN LQIS++  
Sbjct: 307 VTLCYPSSTIWPLLSIFSVMAAANGACYPIVVNSALQVFKQASAKAAGLQNFLQISIAFG 366

Query: 347 SSALVAAMASQAQPVTGIAIVLCTGGLWLGY 377
           +S+LVA  AS  +   G+ IV+   G+ +G+
Sbjct: 367 ASSLVALWASSGEKAIGVGIVVSAIGVLIGF 397