Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella loihica PV-4

 Score =  110 bits (275), Expect = 7e-29
 Identities = 98/389 (25%), Positives = 175/389 (44%), Gaps = 44/389 (11%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           LSA+  +  +A DMYLPA   + ++F +    +  SL+++L G ALG L +G  +D+ G 
Sbjct: 27  LSAIVAITPLAIDMYLPAMSTLASSFNSSVTTVQQSLSLYLAGYALGMLTFGPIADRIGR 86

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           R  ++ GL  F L S  LAF ++V   L LRF+QA    A  V+    + + Y  + ++ 
Sbjct: 87  RPLVLLGLTGFGLISLALAFVTSVEVFLGLRFLQAFIGAAATVVVPGYIKEVYGKNTAKG 146

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEPKTT 190
           + + +  ++ L+P +AP +G L+ +   WH IF  L     +L+V    +    ++ +T+
Sbjct: 147 M-SYVSLIMMLAPLIAPTMGSLILELGEWHLIFFILACYASLLLVLVLTKLRMPSDAQTS 205

Query: 191 SIAQDIKGLLKSKTYLG-------------NVMMFACASAAFFAYLTGMPEI-MAQLGYQ 236
             +Q        +++ G             ++      S AFF YLT  P + M   G  
Sbjct: 206 GRSQ--------RSFFGAYAVVFTKPGVKLHIASGVMTSFAFFCYLTASPFVYMEVFGLD 257

Query: 237 ARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLK------QLIALFTLSAAMIFVASQ 290
                + F     A M+   +  + V KYG   +LK       +  +  LS  +  ++  
Sbjct: 258 KSLFAILFSTNVGALMLANVINSRIVVKYGSRRMLKVATLLAAVAGIGLLSVNLFGLSYH 317

Query: 291 WTLSSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSAL 350
           +T++++ P +    +++V   A+        L   +Q   TA  +  +L+    +L+  L
Sbjct: 318 FTVAALIPFMGFLGVMSVNADAI-------VLMKFQQETGTATAVIGTLRFGFGALAGPL 370

Query: 351 VAAMASQAQPVTGIAIVLCTGGLWLGYVL 379
           +A         TG A+      L LG VL
Sbjct: 371 LALF------YTGTAVPF--SALMLGAVL 391