Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., bicyclomycin resistance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (257), Expect = 9e-27
 Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 22/384 (5%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           L+A+  +  +A DMYLPA   +  +F T    +  SL+V+L G ALG L +G  +D+ G 
Sbjct: 25  LAAIVAITPLAIDMYLPAMATLAHSFNTDIILVQQSLSVYLGGYALGMLCFGPLADRLGR 84

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           R  +I GL  F L S  L  +  +   L LRF+QA    A  V+    + + Y  + ++ 
Sbjct: 85  RPMVIMGLTGFMLISFLLGLAEQINVFLGLRFLQAFIGAAATVVVPGYIKEVYGENTAKG 144

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFL-----TLTLMGIVLVVSTGLQTNEIA 185
           + + +  ++ L+P LAP +G L+ +   WH IF      TL L+ +V+++       + +
Sbjct: 145 M-SYVSLIMMLAPLLAPTIGSLILELGDWHLIFFIQSAYTLLLLLLVIILLRMPSDKDKS 203

Query: 186 EPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQARDI-GLSF 244
                S       +        N+      S AFF YLT  P +  ++    + +  L F
Sbjct: 204 SRSQKSFLGAYATVFSRPGVKMNIASGVLTSFAFFCYLTASPFVYMEVFSLDKSLFALLF 263

Query: 245 IPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAA------MIFVASQWTLSSIWP 298
                A M+   +  + V +YG   +L     L  L+AA      ++ ++  +T+  + P
Sbjct: 264 STNVGALMLANIINTRIVGRYGSLRMLHVSTFLGALAAAGLLGVNLLGLSYHFTVLMLIP 323

Query: 299 ILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQA 358
           ++    +++V   A+        L   KQ   TA  +  +L+    +L+  L+A   +  
Sbjct: 324 LMGSLGIMSVNADAI-------VLMKFKQETGTATAVIGTLRFGFGALAGPLLALFYNGT 376

Query: 359 QPVTGIAIVLCTGGLWLGYVLSNR 382
                 + ++ T  L +G+   NR
Sbjct: 377 --AVPFSALMLTAVLLVGFCQFNR 398