Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  101 bits (251), Expect = 4e-26
 Identities = 97/394 (24%), Positives = 175/394 (44%), Gaps = 42/394 (10%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           L+A+  +  +A DMYLPA   +  +F T    +  SL+V+L G ALG L +G  +D+ G 
Sbjct: 25  LAAIVAITPLAIDMYLPAMATLAHSFHTDITLVQQSLSVYLGGYALGMLCFGPLADRIGR 84

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           R  +I GL  F + S  L  +  +   L LRF+QA    A  V+    + + Y  + ++ 
Sbjct: 85  RPMVIMGLSGFMVVSLLLGLAEQIEVFLGLRFLQAFIGAAATVVVPGYIKEVYGENTAKG 144

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFL--TLTLMGIVLVVSTGLQTNEIAEPK 188
           + + +  ++ L+P LAP +G L+ +   WH IF   +   M ++L+V T L+     +  
Sbjct: 145 M-SYVSLIMMLAPLLAPSIGSLILELGKWHLIFFIQSAYAMLLLLLVITLLRMPSDKDQS 203

Query: 189 TTSIAQDIKGLLKSKTYLG-------------NVMMFACASAAFFAYLTGMPEIMAQLGY 235
           + S           K++LG             N+      S AFF YLT  P +  ++  
Sbjct: 204 SRS----------QKSFLGAYATVFSRPGVKMNIASGVLTSFAFFCYLTASPFVYMEVFS 253

Query: 236 QARDI-GLSFIPQTIAFMVGGYLGKKAVQKYGDELVLK------QLIALFTLSAAMIFVA 288
             + +  L F     A M+   +  + V +YG   +L        L A+  L   ++ ++
Sbjct: 254 LDKSLFALLFSTNVGALMLANIINTRIVGRYGSLRMLHVSTFFGALAAVGLLGVNLLGLS 313

Query: 289 SQWTLSSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSS 348
             +T+  + P++    +++V   A+        L   KQ   TA  +  +L+    +L+ 
Sbjct: 314 YHFTVLMLIPLMGSLGIMSVNADAI-------VLMKFKQETGTATAVIGTLRFGFGALAG 366

Query: 349 ALVAAMASQAQPVTGIAIVLCTGGLWLGYVLSNR 382
            L+A   +        + ++ T  L +G+   NR
Sbjct: 367 PLLALFYNGT--AVPFSALMLTAVLLVGFCQFNR 398