Pairwise Alignments

Query, 302 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., putative DNA-binding transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  308 bits (788), Expect = 1e-88
 Identities = 145/298 (48%), Positives = 205/298 (68%), Gaps = 1/298 (0%)

Query: 2   MFSKSSLEMLDAVARLGSFTAAAEVLHKVPSAISYSVRQIESELGVVLFRRLPRKVELTP 61
           M S+ S++++D VAR+GSFTAAA  LHKVPSA+SY+V+Q+E +LGVVLF R  R V LTP
Sbjct: 1   MLSEQSMQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQVEEDLGVVLFERHHRSVSLTP 60

Query: 62  AGELFMLEARQLLRQMEEIRAQTKRAAHGWRKTLKVTLDNVVKLDKMKPMVEAFYQTFDF 121
           AGE F+ + R +L  +  ++  TKR A+GW+ TL + LDN+V+ DK+  ++  FY+ FD 
Sbjct: 61  AGEHFVKQVRSMLTHLASLKEDTKRVANGWQPTLSIALDNIVRADKISNLIADFYRHFDN 120

Query: 122 AELQINMEVFNGSWEAIAQGRADIVIGATAAVPVGGDFEVRDMGILDWAFVMSPNHPCVR 181
            EL I +EVFNG WEAIA GR+DI IGAT A+PVGGD+  +DMG ++W F++S +HP   
Sbjct: 121 VELIIRIEVFNGVWEAIATGRSDIAIGATTAIPVGGDYRFKDMGDIEWTFLVSKHHPLAA 180

Query: 182 -EQNLSEGFISQFLAICLDDTSSVLPKRHTEHYPKQRRLLLPNWYSAIESLKSGLGVGYM 240
            ++ L +  +  + +ICL+DTS  +PKR T     QRRL++P+W  AI   + GLG+GYM
Sbjct: 181 IDRPLLDDELRSYPSICLEDTSREIPKRMTWLLDNQRRLVVPDWIRAINCFREGLGIGYM 240

Query: 241 PRHMAQPLLASGQLVEKVLPDEKLLSHCCLVWRKDDNHKLIEWMVNYLGSSDQLYSDW 298
           P+H A P + +G L+EK L   K  S CCL W   +    + W+++YLG S++L  DW
Sbjct: 241 PKHFATPFVQAGALIEKELERPKAPSPCCLAWNDANMSPAMAWVLDYLGDSEKLQRDW 298