Pairwise Alignments

Query, 302 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 5e-22
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 8/259 (3%)

Query: 1   MMFSKSSLE---MLDAVARLGSFTAAAEVLHKVPSAISYSVRQIESELGVVLFRRLPRKV 57
           M  +KS+LE   +L AV   G +  AAE L+K  S+++++V +++ +LG+ L     RK 
Sbjct: 1   MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKA 60

Query: 58  ELTPAGELFMLEARQLLRQMEEIRAQTKRAAHGWRKTLKVTLDNVVKLDKMKPMVEAFYQ 117
            LT  GE+ +  +R + + + E+         GW  TL +  + V  +D +   +  F  
Sbjct: 61  YLTTQGEVLLRRSRHVTQSVNELEQLASNLEQGWEPTLTIAREIVYPMDSLVCALSEFLP 120

Query: 118 TFDFAELQINMEVFNGSWEAIAQGRADIVIGATAAVPVGGDFEVRDMGILDWAFVMSPNH 177
                 + +   V  G+ E I Q +ADI I   A +P  G +    +   +   V  P+H
Sbjct: 121 HSRGTRIIMLDSVITGTQELILQNKADIAI--CAGIPPKG-YLPEPLCEQELYLVCHPSH 177

Query: 178 PCVREQNLSEG-FISQFLAICLDDTSSVLPKRHTEHYPKQRRLLLPNWYSAIESLKSGLG 236
           P      L +   ++Q L + + DT  V           ++R  + N++ A   L  G+G
Sbjct: 178 PLADMGILDDDKLLAQHLQLVIKDT-GVQSNIDIGWLKAEQRWTVSNFHEAKVILNQGIG 236

Query: 237 VGYMPRHMAQPLLASGQLV 255
             ++P  + Q  LA+G+LV
Sbjct: 237 FCWIPSFLIQEELAAGKLV 255