Pairwise Alignments

Query, 723 a.a., fatty acid oxidation complex subunit alpha FadB from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., multifunctional fatty acid oxidation complex subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  399 bits (1025), Expect = e-115
 Identities = 258/725 (35%), Positives = 390/725 (53%), Gaps = 37/725 (5%)

Query: 6   KTLQVKQLANGIAELSFCAPA-SVNKLDLHTLESLDKALDALAADSSVKGL-LLSSDKEA 63
           K+  + +L NGIA L+   P  ++N L       + + L  + AD+ ++G+ ++S  K++
Sbjct: 3   KSFTLNRLDNGIAVLTMDVPGETMNTLRAEFGPEICEMLAEIKADAGIRGVVIISGKKDS 62

Query: 64  FIVGADITEFLGLFAKPEAELDEWLQFANRIFNKLEDLPFPTLSALKGHTLGGGCECVLA 123
           F+ GADI+         +A   E  +  + +F  LE L  P ++A+ G  LGGG E  LA
Sbjct: 63  FVAGADISMLDACATAEDAR--ELSKQGHEVFFALESLSIPVVAAINGACLGGGLELALA 120

Query: 124 TDFRI--GDATTSIGLPETKLGIMPGFGGTVRLPRLIGADSAMEIITQGKACRAEEALKV 181
              R+      T +GLPE +LG++PG GGT RLPRL+G   +++++  GK  RA++ALK+
Sbjct: 121 CHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKM 180

Query: 182 GLLDAIVDSDKLIDSAITTLTQAIEEKLDWQKRRQQKTSALTLSKL------EAMMSFTM 235
           GL+D +V    L+ +AI               R  +K    T+ KL         + F  
Sbjct: 181 GLVDDVVPESILLQTAIEMALAGA--------RPAKKPKLSTVEKLLEGTPVGRNIIFEQ 232

Query: 236 AKGMVAQVAGKHYPAPMTSVVTIEEAARLPRDAALDIERKHFIKLAKSTEAQALVGIFLN 295
           A   V +    +YPAP   +  + +         L++E +HF  L  S E++AL  IF  
Sbjct: 233 ALKQVNKKTQGNYPAPEKIIDCVRQGVTKGIVKGLEVEAQHFGDLVVSNESEALRSIFFA 292

Query: 296 DQYIK---GLAKQSAKAASQDTQHAAVLGAGIMGGGIAYQSALKG-VPVLMKDIAPHSLE 351
              +K   G    S KA ++      VLG G+MGGGIA  +  K  +PV +KDI+   L 
Sbjct: 293 TTEMKKESGAGDVSPKAVNK----VMVLGGGLMGGGIASVTTTKAKIPVRVKDISEIGLS 348

Query: 352 LGMTEAAKLLNKQLERGKIDGFKMAGILASITPSLHYAGIDQADVIVEAVVENPKVKAAV 411
             +  A KLL K ++R  +       ++A +T +  Y GI  AD++VEAV E+  +K  +
Sbjct: 349 NALAYAYKLLAKGVKRRHMTPAVRDNLMALMTTTTEYKGIKDADMVVEAVFEDLNLKHQM 408

Query: 412 LSEVEGLVDTETILTSNTSTIPINLLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEHTS 471
           + +VE      TI  SNTS++PI  +A++ +RP+N  G+H+F+PV +MPLVE+I  + TS
Sbjct: 409 VKDVERECGEHTIFASNTSSLPIKQIAEAAERPENVIGLHYFSPVEKMPLVEVIAHDKTS 468

Query: 472 EDTINRVVAYAAKMGKSPIVVNDCPGFFVNRVLFPYFAGFSLLMRDGANFTEIDKVMERQ 531
             TI   VA+A K GK+PIVV D  GF+VNR+L  Y    + L+ +G +   +DK + + 
Sbjct: 469 PQTIATTVAFARKQGKTPIVVKDGAGFYVNRILALYMNEAANLLLEGQSVDHLDKALVK- 527

Query: 532 FGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPTRMAKSGREAIDALYEAKKFGQKNGSGFY 591
           FG+P+GP  LLD VGID       ++ +    R       A D L    + G+KNG GFY
Sbjct: 528 FGFPVGPMTLLDEVGIDVGAKISPILEKELGERF--KAPAAFDKLLADDRKGRKNGKGFY 585

Query: 592 QYTVDKKGKPKKAFSDDVLAILAPVCGAPQSFDPQTLIERTMIPMINEVVLCLEEGIIAS 651
           QY    K   KK   + V  +L    GA    +P  L ER ++ M+NE V CLEEGIIAS
Sbjct: 586 QYGAKSK---KKLVDESVYGVLGLTPGA--DGEPIALAERCVVQMLNEAVRCLEEGIIAS 640

Query: 652 AQEADMALVYGLGFPPFRGGVFRYLDTIGIANYVAMAEKYAD-LGALYQVPQLLKNMAQQ 710
            ++ D+  ++G+GFPPF GG FRY+D++G  + V   ++Y D  G  +     L  MA+ 
Sbjct: 641 PRDGDIGAIFGIGFPPFLGGPFRYMDSLGAKHLVETLKRYQDQFGDRFAPCDRLVEMAES 700

Query: 711 GTSFY 715
           G+ FY
Sbjct: 701 GSKFY 705