Pairwise Alignments

Query, 485 a.a., potassium uptake protein TrkH from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., potassium uptake protein TrkH (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  297 bits (760), Expect = 6e-85
 Identities = 172/488 (35%), Positives = 263/488 (53%), Gaps = 14/488 (2%)

Query: 1   MQFRSIIRIVGLLLALFSVSMLAPALVALIYRDGAGVPFVSTFFVLLLCGGLFWFPNRHH 60
           + FR+++ I+GL L++ +  M AP LVA++  +     F+ +     +C  L     +  
Sbjct: 2   LNFRALLFILGLFLSMLTAFMFAPMLVAVVNGEETVGSFMLSALATGICASLCLHNGQSK 61

Query: 61  KHELKARDGFLIVVLFWTVIGSAGALPFLLAADPNISVTDAFFESFSALTTTGATVIVGL 120
              L  RD FL+  L W ++    A+PF L     I  TDAFFE+ S +TTTG+TV+VGL
Sbjct: 62  GINLNIRDMFLLTSLTWLIVSLFAAMPFTLYH--GIGYTDAFFETMSGITTTGSTVLVGL 119

Query: 121 DELPKAILFYRQFLQWFGGMGIIVLAVAILPVLGIGGMQLYRAEIPGPVKDTKVTPRIAE 180
           D +  +IL +R  LQW GG+G IV+AVAILP L +GGM+L+R E        K  PR   
Sbjct: 120 DTMDHSILIWRSLLQWLGGIGFIVMAVAILPFLNVGGMRLFRTESSD--WSDKAVPRTQS 177

Query: 181 TAKALWYIYLSLTIACASAFWLAGMSLFDAICHSFSTIAIGGFSTHDASMGYFDSYAINL 240
            AK L++IY+ LTI C+ A+ LAGM+ F AI H+ +T++ GG+ST D+SM  F + A + 
Sbjct: 178 MAKHLFFIYILLTIICSVAYHLAGMTWFQAINHAMTTLSTGGYSTSDSSMAAFSNSA-HW 236

Query: 241 ITVVFLLISSCNFTLHYAAFATGGVHPKYYWRDPEFRAFFVIQVLLFVICFSVLLKHHSY 300
           + VVF+        +         V     W D + + F     L FV C        + 
Sbjct: 237 VGVVFMAAGGLPLLMFVQMIQQRDVK---VWNDAQVKGFLFF--LTFVSCSIGFWLWQTR 291

Query: 301 D-SFYQAFDQALFQTVSISTTAGFTTTGFSDWPLFLPVLLLFSSFIGGCAGSTGGGMKVI 359
           D +   A   + F  VS+ TT G+  T +  W  F  +  LF  F+G C+GST GG+K+ 
Sbjct: 292 DIALIDALRLSSFNVVSVVTTTGYGLTDYGAWGAFANIAFLFLMFVGSCSGSTSGGIKIF 351

Query: 360 RVLLLTLQGAREMKRLVHPRAIYPIKLGGRALSQRVVDAVWGFFSAYALVFVVCMLALIA 419
           R  +       ++K+  HP  I+  +   R +++ +V ++  F   Y  V V   + L+ 
Sbjct: 352 RFQIAGAIMREQLKQQCHPNGIFRERYNNRLITEDIVRSLITFVLLYMFVIVGLSVILVL 411

Query: 420 TGMDELSAFSAVAATLNNLGPGLGEV---AVHFADVNDKAKWILIASMLFGRLEIFTLLI 476
           TG+D +++F+     ++N+GPGLG +     +F+ + D AKW L   ML GRLEI T+ +
Sbjct: 412 TGLDPVTSFTGAITAVSNVGPGLGPIIGPVGNFSTLPDLAKWALSLGMLLGRLEILTVAV 471

Query: 477 LLTPTFWR 484
           L  P+FW+
Sbjct: 472 LFHPSFWK 479