Pairwise Alignments

Query, 849 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  262 bits (670), Expect = 4e-74
 Identities = 151/423 (35%), Positives = 240/423 (56%), Gaps = 15/423 (3%)

Query: 426 SQLVYDSLTQLLSREGLVEHCHQIPQLNGGLILIGIDKFRDINDSLGHHQADQLLVAIAQ 485
           S L+ D LTQ +++     H  Q+      ++ IG+D+F+ IN++LGH   D++L  +A+
Sbjct: 202 SMLLGDRLTQAMAQ--CRRHDRQL-----AVMFIGLDRFKRINNALGHPVGDEMLKRVAR 254

Query: 486 RLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLFASPFSMPSDNIAVNVS 545
            L     E   + R G DEF + L D+      K VA  +L   +SP  +   ++ V  S
Sbjct: 255 ALATVVRESDSVFRYGSDEFVVVLGDIVDPQQTKGVADKLLAAISSPQPIDGHDLTVTAS 314

Query: 546 IGI-VYLEEP-NMTVWLRNGSIALSNAKAEHTH-ISFYSPEMANASRKRMLMVTQIKLAL 602
           +GI VY  +  +    ++    A+ N K    +   F++ +M   +R++  + + ++L L
Sbjct: 315 LGISVYPSDGFDAVALIKKAETAMRNVKETGPNDYRFFTEDMNRRARQQQTIESGLRLGL 374

Query: 603 DNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPIAEESGLINAIGEQIL 662
             +EFV  YQP +DL SG+V+G EAL RW  P+ GL+ P DFIP+AE+SGLI  + + +L
Sbjct: 375 QRKEFVLHYQPKLDLKSGKVVGVEALVRWNRPDHGLVYPSDFIPVAEDSGLIVPLSQWVL 434

Query: 663 RQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLDESGLQPTNLTLEITE 722
           ++AC    R  A+   P   ++ VN+S        F+  +   L E+GL PT L LEITE
Sbjct: 435 QEACQQACRWQAQGMRP--LYLSVNVSAIDFRQRGFVEGIARTLKETGLAPTQLELEITE 492

Query: 723 SRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFDCLKIDREFVSQLNAY 782
           S ++ N    +  +  +K+  I +AIDDFGTGYSSL+YL K P D LKID+ FV  L+  
Sbjct: 493 SVLMQNVDTTVAILKAIKQLGIRLAIDDFGTGYSSLSYLQKFPVDVLKIDQSFVGDLSID 552

Query: 783 NIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQGFLFSK---PMAYQDW 839
           + +  +V+ I+++ +   + ++AEG+ET EQ++ L +  C   QG+ FSK   P A+ DW
Sbjct: 553 SNDAKLVSTIISLGKSLNLHIIAEGVETLEQLEFLKKHHCEEVQGYYFSKAVEPQAFADW 612

Query: 840 PTD 842
            T+
Sbjct: 613 MTE 615