Pairwise Alignments

Query, 849 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (621), Expect = 5e-68
 Identities = 148/426 (34%), Positives = 228/426 (53%), Gaps = 12/426 (2%)

Query: 424  LRSQLVYDSLTQLLSRE---GLVEHCHQIPQLNG---GLILIGIDKFRDINDSLGHHQAD 477
            LR    YD LT L +R      +    Q  + NG    L+ + +D+F+ +NDS GH   D
Sbjct: 1053 LRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGEKLALLFLDLDRFKHVNDSYGHSMGD 1112

Query: 478  QLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLFASPFSMPS 537
             LLV  + RL+       L+ R GGDEF I L +V +  D+  +A  +L    +PF +  
Sbjct: 1113 ALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAEQLLAQIVAPFRLFG 1172

Query: 538  DNIAVNVSIGIVYLEEPNMT--VWLRNGSIALSNAKAE-HTHISFYSPEMANASRKRMLM 594
                ++ SIGI    +  M    +++N  +A+ +AK E   +  +YS E    +   + +
Sbjct: 1173 REFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGNFKYYSSERNAQALYHLRL 1232

Query: 595  VTQIKLALDNQEFVPFYQPIVDLNSGE-VLGAEALARWISPEFGLIPPMDFIPIAEESGL 653
               ++ A++ QEF  +YQP +D+  G+  +G EAL RW  P  G + P  FI +AE  GL
Sbjct: 1233 EADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFVRPDIFIKVAEACGL 1292

Query: 654  INAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLDESGLQP 713
            +  I   +LR AC D  R   +   P  F M VN+S      PDFI  +  +LD + +  
Sbjct: 1293 VVDIDRWVLRCACLDGARWAKQTIEP--FKMSVNISAVHFRQPDFIDGVKKILDATHMPA 1350

Query: 714  TNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFDCLKIDR 773
            ++L LEITE  ++    V   ++ +L    I +AIDDFGTGYSSLAYL     D LKIDR
Sbjct: 1351 SSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAYLRNFEVDTLKIDR 1410

Query: 774  EFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQGFLFSKP 833
             F+  + +   + ++V++I+ + R  K+ ++AEG+ET EQ++ L   GC   QG+ F+KP
Sbjct: 1411 SFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSRGCYIVQGYYFAKP 1470

Query: 834  MAYQDW 839
            M+  D+
Sbjct: 1471 MSVSDF 1476