Pairwise Alignments

Query, 849 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  258 bits (660), Expect = 1e-72
 Identities = 163/450 (36%), Positives = 244/450 (54%), Gaps = 21/450 (4%)

Query: 402  ETSLLVQAFIEMTNSLKASFKALRSQLVYDSLTQLLSREGLVEHC-HQIPQLNGG----- 455
            ETS  V  F ++T   KA  + LR    +D+LT L +R    +   H I Q +       
Sbjct: 1054 ETSHFVAVFTDITERKKAE-EDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVA 1112

Query: 456  LILIGIDKFRDINDSLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQ 515
            L+ + +D+F+ INDS+GHH  D LL A+A RL+    E   +AR+GGDEF I L  V + 
Sbjct: 1113 LLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKT 1172

Query: 516  DDLKSVATDILKLFASPFSMPSDNIAVNVSIGIVYL--EEPNMTVWLRNGSIALSNAKA- 572
                 ++  +LK F +PF +   ++ ++ SIGI     +  ++   ++    A+ +AKA 
Sbjct: 1173 KAATLISEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKAL 1232

Query: 573  EHTHISFYSPEMANASRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWI 632
               +  FY+ ++   + + + +   +K A+   E    YQP   L  G + G EAL RW 
Sbjct: 1233 GRNNFQFYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKFCLRKGSLTGLEALLRWH 1292

Query: 633  SPEFGLIPPMDFIPIAEESGLINAIGEQILRQACADTVRGIAENKWPST----FHMHVNL 688
              E G I P +FIP+AEE+G+IN IG  ++  AC          +W         M VNL
Sbjct: 1293 HSELGPISPAEFIPLAEETGIINQIGHWVINHACQQLA------EWNELGFGDISMAVNL 1346

Query: 689  SVNQLSHPDFIAQLHSVLDESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAI 748
            S  QL   D I+ +   L  SGL    L LE+TES I+ N    ++ + +LK   + IA+
Sbjct: 1347 SARQLK-ADIISTIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAV 1405

Query: 749  DDFGTGYSSLAYLHKLPFDCLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGI 808
            DDFGTGYSSL+YL + P D LKIDREFV  +     + ++ +AI+ +    ++ +VAEG+
Sbjct: 1406 DDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGV 1465

Query: 809  ETQEQVDLLNQLGCPRGQGFLFSKPMAYQD 838
            ETQEQ++ L   GC + QGFL SKP++ QD
Sbjct: 1466 ETQEQLNFLALQGCDQVQGFLLSKPLSAQD 1495