Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  101 bits (252), Expect = 7e-26
 Identities = 101/365 (27%), Positives = 173/365 (47%), Gaps = 47/365 (12%)

Query: 11  IINNQVTSVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLV---QHSSLD--LQLL 65
           +++N + +++I+D   +I   N AAEQ+F  S+  ++ Q+L+ L+     S+ D  L   
Sbjct: 638 LLDNVIDAIIIIDARGIIETFNHAAEQMFGYSSAEVLGQNLSMLMPEPDRSAHDGYLDHY 697

Query: 66  TQPLQSGQSITDSDVT-LVIDSKPLMLEVTVSPISWHKELLLLAEMRTIGQQRRLTQELN 124
           TQ   S     + ++T L  +     +E+ VS IS H E   +  +R I +++R+ +  +
Sbjct: 698 TQRGTSRALEQNRELTALRRNGDTFTIELRVSQISHHGERKFIGLVRDITERKRIERMKS 757

Query: 125 QHAQQQAAKLLVRGLAHEIKNPLGGLRGAAQLLERML---PDPALMEYTQIIIEQADRLR 181
           +         LV  ++HE++ PL  + GA  L+       P P++ +   I  + + RL 
Sbjct: 758 E---------LVSIVSHELRTPLTSISGALGLIVGGALGEPSPSMRQMLDIAHQNSLRLG 808

Query: 182 GLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDY--------DPSLPNI 233
            LVD LL   +    K   L L    ++  ++L  GAN  +   +         PSL  +
Sbjct: 809 RLVDDLLDMDKLVAGKMA-LALRAHSLQVQLQLAVGANQGYAAQHRVQLELLPTPSL-QL 866

Query: 234 LMDTDQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGP 293
           + D D+++Q L N++SNA +   +   G + L           G+R      I + D GP
Sbjct: 867 MADDDRLQQVLANLISNAVKF--SPQDGTVRLG----------GERRGDWVRIWVRDQGP 914

Query: 294 GIPPELQDTLFYPMVSG------REGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTI 346
           GI PE +  +F            ++GGTGLGL+IS+ LI+   G+I   S PG    F  
Sbjct: 915 GIAPEFRARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWC 974

Query: 347 YLPIL 351
            LP++
Sbjct: 975 ELPLV 979