Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 97.4 bits (241), Expect = 9e-25
 Identities = 98/383 (25%), Positives = 168/383 (43%), Gaps = 53/383 (13%)

Query: 10  TIINNQVTSVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLVQHSSLDLQLLTQPL 69
           +II++  ++++ LDE L +   N  A  L        ++Q +    +     L  + +  
Sbjct: 291 SIIDSMPSALIALDEQLYVTQWNQEASALSGTPLDDALNQPVFVAFEPLKPFLAQIRRTS 350

Query: 70  QSGQSITDSDVTLVIDSKPLMLEVTVSPISWHKELLLLAEMRTIGQQRRLTQELNQHAQQ 129
           +         VT + + +P    +T  P++      ++  +  I Q+  + + + Q  + 
Sbjct: 351 EQHVVAKIERVTWLRNDEPHHYALTCYPLTGAGGRGVVIRIDDITQRINMEEMMVQSEKM 410

Query: 130 QAAKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDP----------------ALMEYTQI- 172
            +   L  G+AHEI NPLG +   AQ + R L                   A+ +Y Q  
Sbjct: 411 LSVGSLAAGMAHEINNPLGAILHNAQNIRRRLSPELERNREAAEETGVRLEAVNQYLQRR 470

Query: 173 --------IIEQADRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFE- 223
                   I +   R   +V  +L   R   ++  + HL +  + Q +E+      + E 
Sbjct: 471 EVPQLLDGIQQAGSRAAKIVSHMLSFSRMSNRQLADCHLPV-LIDQALEIAGNDFALMEG 529

Query: 224 ---------RDYDPSLPNILMDTDQIEQALLNIVSNAAQILTNQT---HGVITLRTRTVH 271
                    RD+DP +  +    +++EQ LLN++ NAAQ +        G I LRTR   
Sbjct: 530 FDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQVGEPGQIILRTRL-- 587

Query: 272 QANIHGQRHKLVASIEIIDNGPGIPPELQDTLFYPMVSGRE--GGTGLGLSISQNLI-DQ 328
                   +   A I++ DNG GIP  ++  +F P  + +E   GTGLGLS+S  +I + 
Sbjct: 588 --------NPPWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNN 639

Query: 329 HQGKIEVQSWPGR-TVFTIYLPI 350
           HQG++EVQ  PG  T FT+ LP+
Sbjct: 640 HQGQMEVQCQPGHGTTFTLRLPL 662