Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) from Shewanella loihica PV-4

 Score =  318 bits (816), Expect = 1e-91
 Identities = 174/344 (50%), Positives = 234/344 (68%), Gaps = 4/344 (1%)

Query: 11  IINNQVTSVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLVQHSSLDLQLLTQPLQ 70
           ++N+ VT+VL++ + L + YAN AAEQL    + RL   +L    Q  S+D QLL   ++
Sbjct: 6   LLNHLVTAVLVISDDLKLCYANSAAEQLLGLGSHRLTEHNLLDCCQLLSIDHQLLRTAIR 65

Query: 71  SGQSITDSDVTLV-IDSKPLMLEVTVSPISWHKELLL--LAEMRTIGQQRRLTQELNQHA 127
             Q +T +   LV +D +   +++T++P+    +     + E+R + QQRR+ Q+L   A
Sbjct: 66  EHQGLTVNTANLVTLDGQGHTVDMTLTPLEAQPDQPEQGVLELRQVDQQRRIHQQLTLDA 125

Query: 128 QQQAAKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQADRLRGLVDRL 187
           QQQAA+ LVR LAHEIKNPLGGLRGAAQLL R L D    E+T +IIEQADRLR LVDRL
Sbjct: 126 QQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELEDADQREFTDLIIEQADRLRNLVDRL 185

Query: 188 LGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDTDQIEQALLNI 247
           LGPQ+P E    N+H +++KV +LV +    N+   +DYDPS+P+I MD +Q++QA+LNI
Sbjct: 186 LGPQKPTEHSLHNIHAVIQKVLKLVSVTLPGNIHLIQDYDPSIPDIEMDQEQLQQAVLNI 245

Query: 248 VSNAAQIL-TNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGIPPELQDTLFYP 306
           V NA Q L T +  G I ++TRT HQ  I   RHKLV ++ IID+GPGIPPEL DTLFYP
Sbjct: 246 VQNAIQALETVEDGGEIRIKTRTQHQVTIGTTRHKLVLALSIIDDGPGIPPELMDTLFYP 305

Query: 307 MVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGRTVFTIYLPI 350
           MV+GRE G+GLGLSI+ N    H G+I+  S PG+T FTI LP+
Sbjct: 306 MVTGREQGSGLGLSIAHNFARLHGGRIDCASVPGKTEFTILLPL 349