Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 940 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 91.7 bits (226), Expect = 7e-23
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 48/350 (13%)

Query: 32  NPAAEQLFSQSAKRLMHQSLNHLVQHSSL-DLQLLTQPLQSGQSITDSDVTLVI-DSKPL 89
           N  AE+LF  SA  ++ +S  HL     L + + + + L+ G+++   D   +  D + +
Sbjct: 439 NRGAEELFGYSAAEMVGRSTLHLFPPECLAEERDILERLRRGETVKHFDTRRIRKDGRIV 498

Query: 90  MLEVTVSPI-SWHKELLLLAEM-RTIGQQRRLTQELNQHAQQQ----------------- 130
            + VT+SP+      +L ++++ R I  ++    EL +H Q+                  
Sbjct: 499 DVSVTISPLLDGEGRVLGISKIARDITARKAAEAELQRHRQRLEELVQERTRQLEELKDA 558

Query: 131 ------AAKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQADRLRGLV 184
                 A    +  ++HEI+ PL  + G   L+ R    P   E+   +   A  L G++
Sbjct: 559 AESANVAKSAFLANMSHEIRTPLNAMTGLTHLIRRAGLKPQQAEHMDKLEAAAQHLLGVI 618

Query: 185 DRLLGPQRPGEKKWE------NLHLILEKVRQLVELEAGA-NLVFERDYDPSLPNILMDT 237
           + +L   +    K+        +  +L  V   ++    A  LV   +  P  P++L D 
Sbjct: 619 NAILDLSKIEAGKFALEEAPVRVESLLGNVASFLQERVQAKGLVLRTEAQPLPPHLLGDP 678

Query: 238 DQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGIPP 297
            +++QALLN   NA +  T Q  G ITLR  T+ +    G+   L+   E+ D G GIPP
Sbjct: 679 TRLQQALLNYAGNALK-FTEQ--GSITLRVHTLEE----GEADALL-RFEVQDTGIGIPP 730

Query: 298 ELQDTLFYPM------VSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR 341
           E    LF          + R GGTGLGL+I++ L     G+    S PGR
Sbjct: 731 EAMHKLFSAFEQADNSTTRRYGGTGLGLAITRKLAQLMGGEAGASSEPGR 780