Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 89/306 (29%), Positives = 137/306 (44%), Gaps = 54/306 (17%)

Query: 85   DSKPLMLEVTVSPISWHKELLLLAEMRTIGQQRRLTQELNQH------------------ 126
            D +   +EV+ S + W  +  +L   R I  + RL QEL QH                  
Sbjct: 751  DGRTFNVEVSASRVEWEGQAYVLCLHRDITFRLRLEQELEQHRHHLEELVHARTMELAEA 810

Query: 127  -----AQQQAAKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQADRLR 181
                 +  +A    +  ++HEI+ P+  + G + LL R + D    E    I   A  L 
Sbjct: 811  RDEAESASRAKSAFLANMSHEIRTPMNAILGLSHLLGREVGDARARERVDKIHGAATHLL 870

Query: 182  GLVDRLLGPQRPGEKKWENLHL---------ILEKVRQLV--ELEAGANLVFERDYDPSL 230
             +++ +L   +   +K   LHL         + +    L+  +LEA   L  ER  DP+L
Sbjct: 871  NIINDILDLSKIEAEK---LHLDMQDFLLARLFDNAENLLRPQLEA-KGLRLERHLDPAL 926

Query: 231  PNILM-DTDQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEII 289
            P +L  D   ++Q L+N +SNA +       G ITL  R + ++     + ++   +E+ 
Sbjct: 927  PPVLRGDAMHLQQILVNFLSNAVKF---SDQGHITLGARLLSRS-----QSQVELRLEVA 978

Query: 290  DNGPGIPPELQDTLFYPM------VSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-T 342
            D G GI PE Q  LF          + + GGTGLGL+IS+ LI    G I V S PG+ +
Sbjct: 979  DQGIGIAPEQQAALFQAFEQADNSTTRKYGGTGLGLAISKRLIRLMGGDIGVDSKPGQGS 1038

Query: 343  VFTIYL 348
            VF I L
Sbjct: 1039 VFWISL 1044