Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 717 a.a., sensory box histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 8e-22
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 37/362 (10%)

Query: 11  IINNQVTSVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLVQHSSLDLQ------L 64
           II    +++ ++D++ +I   N   E+LF  + + L+ +S+N L+  +  ++        
Sbjct: 363 IIEASPSALFMVDKTGVITLVNTQGERLFGYTREELLGRSINMLLPETLREIHQQHLSHY 422

Query: 65  LTQPLQSGQSITDSDVTLVIDSKPLMLEVTVSPISWHKELLLLAEMRTIGQQRRLTQELN 124
           L  P+    S+ D  +    D  PL +EV ++P+ +   + +L  +  I +++R+  +  
Sbjct: 423 LVHPIAKNMSMRDDLLGCCKDGTPLAVEVGLTPVHFSNGIYILTTINNISERKRIEAQRI 482

Query: 125 QHAQQ-----QAAKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPA---LMEYTQIIIEQ 176
           +H  +     Q         +H++K+PL G+      L   L D     + +Y  +I  +
Sbjct: 483 EHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVDNTNENVQKYLGLIQNR 542

Query: 177 ADRLRGLVDRLLGPQRPGEKKWENLHL----ILEKVRQLVELEAGANLVFERDYDPSLPN 232
             R+  L+D LL   R G    E + +    ++E +  LV    G  LV E D+    P+
Sbjct: 543 IQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFALVAPPQGFELVLEGDF----PH 598

Query: 233 ILMDTDQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNG 292
                  +E  + N++SNA +   ++  GV+ +   T +                ++D+G
Sbjct: 599 FKTVKTLLELVVRNLISNAIKH-HDRGFGVLKVLCETKNT----------YYWFSVVDDG 647

Query: 293 PGIPPELQDTLFYPMVSGREG----GTGLGLSISQNLIDQHQGKIEVQSWPGRTVFTIYL 348
           PGI  E Q  +F    + R      G+GLGLS+ +  +D   GKI+++S      F    
Sbjct: 648 PGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLESVGRGCCFRFSW 707

Query: 349 PI 350
           PI
Sbjct: 708 PI 709