Pairwise Alignments

Query, 609 a.a., translational GTPase TypA from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., virulence regulator BipA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  986 bits (2550), Expect = 0.0
 Identities = 484/601 (80%), Positives = 544/601 (90%)

Query: 6   IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTLESRGDVEERVMDSNDIEKERGITILAKNT 65
           +E LRNIAIIAHVDHGKTTLVDKLL QSGTL +RG+  ERVMDSND+EKERGITILAKNT
Sbjct: 2   LENLRNIAIIAHVDHGKTTLVDKLLSQSGTLATRGEATERVMDSNDLEKERGITILAKNT 61

Query: 66  AINWNDYRINIVDTPGHADFGGEVERIMSMVDSVLLIVDAVDGPMPQTRFVTQKAFAHGL 125
           AI WNDYRINIVDTPGHADFGGEVER++SMVDSVLL+VDAVDGPMPQTRFVT+KAFA GL
Sbjct: 62  AIKWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTKKAFAQGL 121

Query: 126 KPIVVINKIDRPGARPDWVMDQVFDLFDNLGATDEQLDFQVVYASALNGWATLVEGETGE 185
           KPIVVINKIDRPGARPDWV+DQVFDLFDNLGATDEQLDF +VYASALNG+ATL      E
Sbjct: 122 KPIVVINKIDRPGARPDWVIDQVFDLFDNLGATDEQLDFPIVYASALNGFATLDPDVVSE 181

Query: 186 NMEPLFQAIVDNVAAPQVDLDGPLQMQISQLDYSSYVGVIGVGRIKRGKVKPNQQVTVIG 245
           +M PLFQ IV+ V++P  D DGP QMQISQLDY+SYVGVIGVGRI RG +K NQQV+VIG
Sbjct: 182 DMTPLFQTIVEKVSSPDADADGPFQMQISQLDYNSYVGVIGVGRINRGSIKTNQQVSVIG 241

Query: 246 ADGKKRNGKIGTVLGYLGLQRSETDQATAGDIVAVTGLGELKISDTICDVNALEALPPLS 305
           ADGK RNGK+G VLGY+GL+R+E D A AGDIVA+TGLGELKISDT+C    +EA+PPLS
Sbjct: 242 ADGKVRNGKMGQVLGYMGLERTEVDVANAGDIVAITGLGELKISDTVCAAGNVEAMPPLS 301

Query: 306 VDEPTVTMTFQVNTSPFAGKEGKFVTSRNILERLEKELVHNVALRVEQTEDPDKFRVSGR 365
           VDEPT+TMTFQVNTSPFAGKEGK+VTSRNILERL++ELVHNVALRVE+T+ PD+F VSGR
Sbjct: 302 VDEPTLTMTFQVNTSPFAGKEGKYVTSRNILERLQQELVHNVALRVEETDSPDRFAVSGR 361

Query: 366 GELHLSILIENMRREGFELAVSRPEVILKHEDGQLMEPFETVTIDVQEEHQGGIMEKIGM 425
           GELHLSILIENMRREG+ELAVSRPEVILK  DG+L EPFET+T+DV+EEHQG ++EK+G+
Sbjct: 362 GELHLSILIENMRREGYELAVSRPEVILKTIDGELCEPFETLTVDVEEEHQGTVIEKLGI 421

Query: 426 RKGELKDMSPDGKGRIRMDFVMPSRGLIGFQTEFMTLTSGSGLLYHSFDHYGPHKGGVIG 485
           RK E+KDM  DGKGR+R+DFV+PSRGLIGFQTEF+T TSG+GL+YHSFDHYGPHKGG IG
Sbjct: 422 RKAEMKDMQLDGKGRVRVDFVIPSRGLIGFQTEFLTATSGTGLIYHSFDHYGPHKGGDIG 481

Query: 486 QRVNGVLVSNGTGKALTNALFNLQERGRMFIGHGVEVYEGMVIGIHSRDNDLTVNPLKGK 545
           QR NGVL+SN TGKALT ALF LQ+RGR+FIGH  EVYEG V+GIH+R NDLTVN LKGK
Sbjct: 482 QRANGVLISNATGKALTFALFGLQDRGRLFIGHAAEVYEGQVVGIHARSNDLTVNCLKGK 541

Query: 546 QLTNVRASGTDDAQVLTPPIIMSLEQALEFIDDDELVEVTPVSIRIRKRFLTENDRKRAS 605
           QLTN+RASGTD+AQVLT PI ++LEQALEFIDDDELVEVTP SIR+RK+ LTENDRKRAS
Sbjct: 542 QLTNMRASGTDEAQVLTTPITLTLEQALEFIDDDELVEVTPKSIRVRKKHLTENDRKRAS 601

Query: 606 R 606
           R
Sbjct: 602 R 602