Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., general secretion pathway protein C (RefSeq) from Shewanella amazonensis SB2B

 Score =  183 bits (464), Expect = 5e-51
 Identities = 111/284 (39%), Positives = 165/284 (58%), Gaps = 14/284 (4%)

Query: 25  KPISEGLTLLLLVASAWTLGKMVWVVSAEQTPVPTW--SPTLSGLKAERQPLDISVLQKG 82
           KP+S  +  L   A  +   ++ W +   QT    W  +P  SG       +D+  L+  
Sbjct: 17  KPLSRLVFWLAFAACCYLAAQISWRLVPAQTESAAWRPNPPSSGTNGN-SGIDVDGLKSL 75

Query: 83  ELFGVF--TEPKEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQATYG 140
            LFG    ++PKE PV  Q V+ DAPKT LS+VL+G+VAS   QK LA+I + G Q TY 
Sbjct: 76  SLFGKADTSKPKEQPV--QEVITDAPKTSLSIVLTGIVASTAEQKGLAIIESGGSQETYE 133

Query: 141 INEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYTAPATASVSNPPRPR--PNQPN 198
           + E I+GT A LK V  DRVII+N+GR ETLML+G+ YT+ A+    N  R R   ++  
Sbjct: 134 LGEKIKGTSASLKEVYADRVIITNAGRYETLMLDGVPYTSGASTPTINNTRQRGFEDEVR 193

Query: 199 AVPQFED-----KVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESI 253
            + +  D     ++ + R+ +  +P +I  Y+ +S V + ++++GYR+ PGKDP LF   
Sbjct: 194 RIDKRRDEDVAAELSSSRDELLADPSKITDYISISPVTQGEELVGYRLQPGKDPGLFSQA 253

Query: 254 GLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 297
           GL+ GD+A ++NG DLT       L   + E+TE+S+ VER+GQ
Sbjct: 254 GLKPGDLAKSINGYDLTVSTQALELMGQLTELTEISVMVEREGQ 297