Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., general secretion pathway protein C (RefSeq) from Shewanella loihica PV-4

 Score =  176 bits (446), Expect = 6e-49
 Identities = 114/295 (38%), Positives = 168/295 (56%), Gaps = 16/295 (5%)

Query: 14  RLLSQNTLRWQKPISEGLTLLLLVASAWTLGKMVW-VVSAEQTPVPTWSPTLSGLKAERQ 72
           +++S+ +   QKP+S  +  L L+ + + L ++ W +V   +TP   W  T         
Sbjct: 6   KVISKASAVPQKPLSSAVFWLGLITAIYLLAQITWKLVPVAETP-QKWQATPVSSSQSSS 64

Query: 73  PLDISVLQKGELFGVFTEP---KEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAV 129
            +++S LQ+  LFG  T+P   K  PVVE+ +  DAPKT LS+ L+GVVAS   Q  LAV
Sbjct: 65  QVNVSTLQELALFGK-TDPNSDKPKPVVEEKIT-DAPKTSLSIQLTGVVASTAEQHGLAV 122

Query: 130 IANRGVQATYGINEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYTAPATAS---- 185
           I + G Q TY + + I+GT A LK V  DR+IISNSGR ETLML+GL Y     A+    
Sbjct: 123 IESSGSQNTYSLGDKIKGTSASLKEVYADRIIISNSGRYETLMLDGLKYETQGAANSQLQ 182

Query: 186 ---VSNPPRPRPNQPNAVPQFEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVS 242
               S   R    + N+    E  ++  R+A+  +P +I  Y+ +S V    ++ GYR++
Sbjct: 183 EARSSRDVRTIDKRSNSAVSKE--LEESRDALLEDPSKITDYLAISPVNVGGELQGYRLN 240

Query: 243 PGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 297
           PGKD  LFE  G +  D+A ++NG DLTD +    +   + E+TE+SL VER+GQ
Sbjct: 241 PGKDRQLFEQAGFKANDLAKSMNGYDLTDMSQALEVMAQLPELTEISLMVEREGQ 295