Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., general secretion pathway protein C (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  168 bits (425), Expect = 2e-46
 Identities = 107/286 (37%), Positives = 160/286 (55%), Gaps = 17/286 (5%)

Query: 25  KPISEGLTLLLLVASAWTLGKMVWVVSAEQTPVPTWSP---TLSGLKAERQPLDISVLQK 81
           KP+S+ +     + S     ++ W +    +    WSP   T +G  A +  +D+  LQ+
Sbjct: 17  KPLSQVVFWCGFILSLLLAAQITWKLVPTSSSPTAWSPSAVTTTGKGAGQ--IDLDGLQQ 74

Query: 82  GELFG---VFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQAT 138
             LFG     T+  +A VVE   V DAPKT LS+ L+GVVAS   QK LA+I + G Q T
Sbjct: 75  LALFGRADAKTDKPKAEVVE--TVTDAPKTSLSIQLTGVVASTADQKGLAIIESSGSQET 132

Query: 139 YGINEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYT--APATASVSNPPRPRPNQ 196
           Y + + I+GT A LK V  DR+II+N+GR ETLML+GL YT  +PA   +      +P  
Sbjct: 133 YSLGDKIKGTSASLKEVYADRIIITNAGRYETLMLDGLVYTSQSPANQQLQKAKSGKPEV 192

Query: 197 PNAVPQ-----FEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFE 251
            + V Q        ++   R  +  +P +I  Y+ +S VK+ + V+GYR++PGKD  LF+
Sbjct: 193 VSRVDQRKNAEISQELAESRTELLADPSKITDYIAISPVKQGESVVGYRLNPGKDVNLFK 252

Query: 252 SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 297
             G +  D+A  +NG DLT  +    +   + E+TE+S+ VER+GQ
Sbjct: 253 QAGFKPNDLAKTINGYDLTVMSQALEMMSQLPELTEVSIMVEREGQ 298