Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., general secretion pathway protein C (RefSeq) from Shewanella sp. ANA-3

 Score =  165 bits (418), Expect = 1e-45
 Identities = 101/282 (35%), Positives = 155/282 (54%), Gaps = 9/282 (3%)

Query: 25  KPISEGLTLLLLVASAWTLGKMVWVVSAEQTPVPTWSPTLSGLKAERQ-PLDISVLQKGE 83
           KP+S+ +     + S     ++ W +    +    WSPT      +    +D++ LQ+  
Sbjct: 17  KPLSQVVFWFGFILSLLLAAQITWKLVPSTSSPTAWSPTAVTTTGKGAGQVDLAGLQQLA 76

Query: 84  LFGVFTEPKEAPVVEQ-PVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQATYGIN 142
           LFG      + P VE    V DAPKT LS+ L+GVVAS   QK LA+I + G Q TY + 
Sbjct: 77  LFGRADAKSDKPKVEVVETVTDAPKTSLSIQLTGVVASTADQKGLAIIESSGSQETYSLG 136

Query: 143 EVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYT--APATASVSNPPRPRPNQPNAV 200
           + I+GT A LK V  DR+II+N+GR ETLML+GL YT  +PA   +      +    + V
Sbjct: 137 DKIKGTSASLKEVYADRIIITNAGRYETLMLDGLVYTSQSPANQQLQKAKSEKAEVVSRV 196

Query: 201 PQ-----FEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGL 255
            Q        ++   R  +  +P +I  Y+ +S V++ + V+GYR++PGKD  LF+  G 
Sbjct: 197 DQRKNTEISQELAESRSELLADPSKITDYIAISPVRQGESVVGYRLNPGKDVNLFKQAGF 256

Query: 256 QDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 297
           +  D+A ++NG DLT  +    +   + E+TE+S+ VER+GQ
Sbjct: 257 KPNDLAKSINGYDLTVMSQALEMMSQLPELTEVSIMVEREGQ 298