Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  292 bits (747), Expect = 5e-83
 Identities = 218/688 (31%), Positives = 336/688 (48%), Gaps = 100/688 (14%)

Query: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89
           +F   DIQ  +  + R+  +  +VDP V+G + + S   +   Q Y   L+ L + GF+V
Sbjct: 102 NFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSV 161

Query: 90  VEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDN 149
           V++  GV +V+   DAK    P+ S ++ A G+ ++T+   ++  +   L P+LR ++  
Sbjct: 162 VDV-GGVAQVVPEADAKLLGGPIYSADKPA-GNGMLTRTFRLQYENAVNLIPVLRPIVSP 219

Query: 150 AGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVE 209
               N   Y   N I++T  A  ++R+A++I  +D     + +VV ++N  A ++ ++V 
Sbjct: 220 NNPINA--YPGNNTIVVTDYAENLSRVAQLIEGIDTPSAIDTDVVPIHNGIAVDIAQMVS 277

Query: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILI-SGDPKVRERLKRLIKQLDVEMAAKGNNRV 268
            L +T     T    K   + D R+NSI+I +G P+  E  + LI +LD       N  V
Sbjct: 278 DLLETQGGDQTQ---KINVIGDPRSNSIIIRAGSPERTELARNLIYKLDNAQNNPSNLHV 334

Query: 269 VYLKYAKAEDLVEVLKGV----------------------SENLQAEKGT---------- 296
           VYL+ A+A  L + L+G+                      S N Q+ +G+          
Sbjct: 335 VYLRNAQAGKLAQALRGLLTGESEGESSDNSRSVLSGMGASTNGQSGQGSSGDGTSGTTS 394

Query: 297 ---------------GQPTTSKRNE---------VMIAAHADTNSLVLTAPQDIMNAMLE 332
                          G    S +NE         V I A A TN+L+++AP  +   + E
Sbjct: 395 GNASTSGNGYGQGSNGTTPASTKNEQNTAFSAGGVTIQADATTNTLLISAPDPLYRNLRE 454

Query: 333 VIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGAS--IGNVMIGL 390
           VI  LD RRAQV+IE+LIVE+ E D    GVQW         Q GN G S  IG V +G 
Sbjct: 455 VIDLLDQRRAQVVIESLIVEVGEDDASEFGVQW---------QTGNLGGSGVIGGVNLG- 504

Query: 391 EEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMG---DWTALI 447
                                N    T  D       L  + G      +G   D   L 
Sbjct: 505 -----------------GTALNLNGKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLA 547

Query: 448 NAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTA---GSNNDNPFQTVDRKEV 504
            A+ +   +N+LS+P++  +DN  AS  VG+ +P ++GS     G  ++NPFQTV R+EV
Sbjct: 548 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 607

Query: 505 GIKLKVVPQINEGNSVQLNIEQEVSNVLG-ANGAVDVRFAKRQLNTSVMVQDGQMLVLGG 563
           G+KL V PQI+EG +V+L+I QEVS+V   A+    +   KR ++TS+++ DGQ++VLGG
Sbjct: 608 GLKLNVRPQISEGGTVKLDIYQEVSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGG 667

Query: 564 LIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRK 623
           L+ +   +S   VP L  IP +G LFR+   Q+ K NLMVF++P IIRD     GIT  +
Sbjct: 668 LLQDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYIIRDTAAGRGITLNR 727

Query: 624 YNYIRAEQLFRAEKGLRLLDDASVPVLP 651
           Y+++R  Q          + D   P LP
Sbjct: 728 YDFMRRAQGLLQPDRSWAMPDMQAPQLP 755