Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Pseudomonas fluorescens FW300-N2E2

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 10/181 (5%)

Query: 436 VSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNP 495
           +S A G    +INA+     +  L+ PS+  +    ASF+ G EVP+   S AGS+N   
Sbjct: 190 LSFATGKTLLMINALEGSGFAYTLARPSLVALSGQSASFLAGGEVPIPVPS-AGSDN--- 245

Query: 496 FQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVS-----NVLGANGAVDVRFAKRQLNTS 550
             +++ KE GI+L + P +   N + L +  EVS     N +   G +      R+ +TS
Sbjct: 246 -VSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTNAVNIAGTLVPALTVRRTDTS 304

Query: 551 VMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
           + + DG+  V+ GLI  R     +K P LGD+P+LG  FR  +   E++ L++ + P ++
Sbjct: 305 IALADGESFVISGLISTRNSSQVNKFPGLGDVPILGAFFRDNAINREERELLMIVTPHLV 364

Query: 611 R 611
           +
Sbjct: 365 Q 365