Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., Type IV pilus biogenesis protein PilQ from Pseudomonas fluorescens FW300-N2E2

 Score =  122 bits (307), Expect = 4e-32
 Identities = 105/400 (26%), Positives = 174/400 (43%), Gaps = 47/400 (11%)

Query: 224 LKPKFVADERTNSILI---SGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLV 280
           LK K +   +  ++L+   + +   RER + L  Q  +   A     ++ + YAKA D+ 
Sbjct: 334 LKTKGLDKRKVGNVLLVAPADEIAARER-QELESQKQIADLAPLRRELLQVNYAKATDIA 392

Query: 281 EVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR 340
           ++ + V+         G  T  +R          TN+++    QD ++ +  ++ QLDI 
Sbjct: 393 KLFQSVTSAEAKADERGTITVDER----------TNNIIAYQTQDRLDELRRIVAQLDIP 442

Query: 341 RAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTT-QT 399
             QV+IEA IVE       +LGV+WG    GS+   GN  +S      G+     TT  T
Sbjct: 443 VRQVMIEARIVEANVDYDKSLGVRWG----GSIQNKGNWSSS------GVTTGDSTTIGT 492

Query: 400 KAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSN-- 457
                TN  F+                A  +  G  ++    +    +   + + + N  
Sbjct: 493 PGSTSTNQPFVD-------------LGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGE 539

Query: 458 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 517
           I+S P +   D   A  + G E+P    S++G+ +      V  KE  + L+V PQI   
Sbjct: 540 IVSQPKVVTSDKETAKILKGTEIPYQEASSSGATS------VSFKEASLSLEVTPQITPD 593

Query: 518 NSVQLNIEQEVSNVLGANGAVDVR-FAKRQLNTSVMVQDGQMLVLGGLIDERALESESKV 576
           N + + ++         N   DV    K ++N  V+V DG+ +V+GG+      +   KV
Sbjct: 594 NRIIMEVKVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKV 653

Query: 577 PLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTA 616
           P LGD+P LG+LFR       K  L+VF+ P I+ +   A
Sbjct: 654 PFLGDVPYLGRLFRRDVVSDSKSELLVFLTPRIMNNQAIA 693