Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  302 bits (774), Expect = 3e-86
 Identities = 202/600 (33%), Positives = 331/600 (55%), Gaps = 55/600 (9%)

Query: 36  IQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNG 95
           ++EF  I+G    KT+++DP V G++ V S   L+ E     F SVL+ + F V++    
Sbjct: 52  VEEFSAILG----KTVVLDPRVSGRITVMSRQALDREGVRRLFYSVLDAHNFTVIDEGER 107

Query: 96  VLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNV 155
           +L +    DAKT A   ++ E+ A   + IT+V+ +++    +++ L+R L+  +  G V
Sbjct: 108 IL-ITPVSDAKTRA--GIADEQSATPSQFITRVLDLQSSVAADVAGLIRPLV--SANGYV 162

Query: 156 VHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTT 215
                +N +++T  AA V R+A +++R+D   ++   VV L +A A ++  +VEA     
Sbjct: 163 GPSVSSNALVVTDTAANVQRIAGVVQRLDSGRNRNHVVVRLKHAQAGDIAPLVEASGGKR 222

Query: 216 DAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMAAKGNN-RVVYLKYA 274
           + +          +AD R+N ++I G P VR+RL  L + LDV  AA  +N RV+ L+++
Sbjct: 223 EGETAGVV-----IADARSNRLVIIGAPAVRQRLVDLARTLDVPAAASQDNARVIRLRHS 277

Query: 275 KAEDLVEVLKGVSENLQAEKG-TGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEV 333
            A+ L EVL+GV ++ +      GQ  T+  +   I A    N+LV+ A    +  +  +
Sbjct: 278 DAKQLAEVLEGVGQDRKTTPVLAGQRETAGSSPFRIKADESQNALVMIAEPAQVRIIENI 337

Query: 334 IGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEA 393
           + +LD  RAQVLI A IVE++      LGVQWG            +G++ G +       
Sbjct: 338 VRELDQPRAQVLIHAAIVEVSGDISEALGVQWGV----------KSGSATGGI------- 380

Query: 394 KDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSND 453
                         NF   +      D+ KL       +GA + +    ++AL++A+++D
Sbjct: 381 --------------NFPGTDIPIVGLDFNKLDK---KTEGAFLRLGGDRFSALVSALASD 423

Query: 454 SSSNILSSPSITVMDNGEASFIVGEEVPVITGS--TAGSNNDNPFQTVDRKEVGIKLKVV 511
           + SN+LS+PS+  +DN EA  IVG+ VP  TGS  T+G+  DNPF TV+RK+VGI LKV 
Sbjct: 424 THSNLLSTPSLLTLDNQEAEIIVGQNVPFKTGSYATSGNGADNPFTTVERKDVGISLKVK 483

Query: 512 PQINEGNSVQLNIEQEVSNVLGANGAVD---VRFAKRQLNTSVMVQDGQMLVLGGLIDER 568
           P INEG++++L +EQEVS++  +   VD   +   KR L ++++  DG+++V+GGLI + 
Sbjct: 484 PYINEGSTLRLEVEQEVSDIAPSVSGVDSSDLITNKRALKSTILADDGEIIVIGGLIRDS 543

Query: 569 ALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIR 628
               +S VPLL  IP LG LFR       K NLMVF++PTI+R       +++++Y+ +R
Sbjct: 544 VRSQQSGVPLLRSIPYLGALFRWNRDTQTKSNLMVFLRPTIVRSSEDLADVSRQRYDALR 603