Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., type II secretion system protein GspD from Pseudomonas fluorescens FW300-N2C3

 Score =  290 bits (743), Expect = 1e-82
 Identities = 215/685 (31%), Positives = 335/685 (48%), Gaps = 94/685 (13%)

Query: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89
           +F   DIQ  +  + R+  +  +VDP V+G + + S   +   Q Y   L+ L + GF+V
Sbjct: 102 NFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSV 161

Query: 90  VEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDN 149
           V++  GV +V+   DAK    P+ S ++ A G+ ++T+   ++  +   L P+LR ++  
Sbjct: 162 VDV-GGVAQVVPEADAKLLGGPIYSADKPA-GNGMLTRTFRLQYENAVNLIPVLRPIVSP 219

Query: 150 AGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVE 209
               N   Y   N I++T  A  ++R+A++I  +D     + +VV ++N  A ++ ++V 
Sbjct: 220 NNPINA--YPGNNTIVVTDYAENLSRVAQLIEGIDTPSAIDTDVVPIHNGIAVDIAQMVS 277

Query: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILI-SGDPKVRERLKRLIKQLDVEMAAKGNNRV 268
            L +      T    K   + D R+NSI+I +G P+  E  + LI +LD       N  V
Sbjct: 278 DLLENQGGDQTQ---KINVIGDPRSNSIIIRAGSPERTELARNLIYKLDNAQNNPSNLHV 334

Query: 269 VYLKYAKAEDLVEVLKGV------------------------------------------ 286
           VYL+ A+A  L + L+G+                                          
Sbjct: 335 VYLRNAQAGKLAQALRGLLTGESEGEGNDNSRSVLSGMGANTNGQSGQGSSGDGTGSTTS 394

Query: 287 -----SENLQAEKGTGQPTTSKRNE---------VMIAAHADTNSLVLTAPQDIMNAMLE 332
                S N  A+   G  + S +NE         V I A A TN+L+++AP  +   + E
Sbjct: 395 GSASTSGNGYAQGSNGATSASTKNEQSTAFSAGGVTIQADATTNTLLISAPDPLYRNLRE 454

Query: 333 VIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGAS--IGNVMIGL 390
           VI  LD RRAQV+IE+LIVE+ E D    GVQW         Q GN G S  IG V +G 
Sbjct: 455 VIDLLDQRRAQVVIESLIVEVGEDDASEFGVQW---------QTGNLGGSGVIGGVNLGG 505

Query: 391 EEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAV 450
                          N N   +     +G    + +    I G    +   D   L  A+
Sbjct: 506 S------------GLNLNGKTSIDVLPQGLNLGVVNGTVDIPGIGKIL---DLKVLARAL 550

Query: 451 SNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGS---TAGSNNDNPFQTVDRKEVGIK 507
            +   +N+LS+P++  +DN  AS  VG+ +P ++GS     G  ++NPFQTV R+EVG+K
Sbjct: 551 KSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLK 610

Query: 508 LKVVPQINEGNSVQLNIEQEVSNVLG-ANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLID 566
           L V PQI+EG +V+L+I QEVS+V   A+    +   KR ++TS+++ DGQ++VLGGL+ 
Sbjct: 611 LNVRPQISEGGTVKLDIYQEVSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQ 670

Query: 567 ERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNY 626
           +   +S   VP L  IP +G LFR+   Q+ K NLMVF++P IIRD     GIT  +Y++
Sbjct: 671 DGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYIIRDTAAGRGITLNRYDF 730

Query: 627 IRAEQLFRAEKGLRLLDDASVPVLP 651
           +R  Q          + D   P LP
Sbjct: 731 MRRAQGLLQPDRSWAMPDMQAPQLP 755