Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., type IV pilus secretin (or competence protein) PilQ from Pseudomonas stutzeri RCH2

 Score =  119 bits (299), Expect = 4e-31
 Identities = 106/417 (25%), Positives = 175/417 (41%), Gaps = 50/417 (11%)

Query: 212 NKTTDAQNTPE------FLKPKFVADERTNSILI---SGDPKVRERLKRLIKQLDVEMAA 262
           N T   QN P        LK K +   +  ++L+   + +   RER + L  Q  +   A
Sbjct: 312 NITLRLQNVPWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARER-QELESQRQIAELA 370

Query: 263 KGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTA 322
                VV + YAKA D+  + + V+          Q  T +R  +  A    TN+++   
Sbjct: 371 PLRREVVQVNYAKAADIARLFQSVTNT--------QGQTDERGSM--AVDDRTNNIIAYQ 420

Query: 323 PQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGAS 382
            Q+ ++ +  ++ QLDI   QV+IEA IVE        LGV+WG    G+ +     GA 
Sbjct: 421 TQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKALGVRWG----GTQLFANGRGAV 476

Query: 383 IGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGD 442
            GN  +G E      ++   +   +  + N T      Y      L              
Sbjct: 477 YGNDDLGDEGGNSGDESSGNFPFVDMGVTNRTAGIGIGYITDNLILD------------- 523

Query: 443 WTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRK 502
               ++A+    +  ++S P +   D   A  + G E+P    S++G+       +    
Sbjct: 524 --LELSAMEKSGNGEVVSQPKVMTADKETAKILKGSEIPYQEASSSGAT------STTFV 575

Query: 503 EVGIKLKVVPQINEGNSVQLNI---EQEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQML 559
           E  + L+V PQI   N + + +   + E       NG   +R  K ++N  ++V DG+ +
Sbjct: 576 EAALSLEVTPQITPDNRIIMEVKVTKDEPDFANDVNGTPTIR--KNEVNAKILVNDGETV 633

Query: 560 VLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTA 616
           V+GG+       S  KVP LGD+P LG+LFR       K  L++F+ P I+     A
Sbjct: 634 VIGGVFSNTQSRSVDKVPFLGDLPYLGRLFRRDIVADSKSELLIFLTPKILNHQAVA 690