Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., general secretion pathway protein D from Pseudomonas stutzeri RCH2

 Score =  357 bits (915), Expect = e-102
 Identities = 227/665 (34%), Positives = 367/665 (55%), Gaps = 77/665 (11%)

Query: 11  LLAGSLLSTPLAMA-------------NEFSASFKGTDIQEFINIVGRNLEKTIIVDPSV 57
           LLA SLL+ PL +              + ++ + K  DI+ FI+ + +   +T IVDP V
Sbjct: 12  LLATSLLAAPLPLLAAEQGIEPSTTRQDGWTINLKDADIRAFIDQISQLSGQTFIVDPRV 71

Query: 58  RGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEE 117
           +G+V V S  TL+  + Y  FLSV+  +GF+V+   + V +V+ + +AK  A     G  
Sbjct: 72  KGQVSVVSNATLSLSEVYQLFLSVMATHGFSVLTQGD-VARVVPNAEAKAEA-----GGG 125

Query: 118 RANGDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLA 177
            + GD++ T+V+ V++ S  EL PL+R L+   G  ++     AN ++I+ R+A + R+ 
Sbjct: 126 PSGGDQLETRVIQVQHTSAAELIPLIRPLVPQFG--HLAAVSSANALIISDRSANIARIQ 183

Query: 178 EIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSI 237
            ++R++D+A   +  V+ L +  A ++  ++       +A+ T      + +AD RTN +
Sbjct: 184 NLVRQLDRAESNDYGVLNLQHGWAVDIAEVLRNSLMRGEAKTTAGV---QIIADSRTNRL 240

Query: 238 LISGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTG 297
           +  G  + R +L  L + LD       N RV+ L++  A+ L E L  +SE L+  + +G
Sbjct: 241 IFIGPSEARGKLASLAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKNPE-SG 299

Query: 298 QPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGD 357
           + TT++   ++I A    N+LVL A  +++  M  ++ QLD+ RAQV++EA IVE++   
Sbjct: 300 EATTTRPQNILIRADESLNALVLLADPELIGTMESIVRQLDVPRAQVMVEAAIVEVSGDI 359

Query: 358 GINLGVQW-----GSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412
              LGVQW     GS      + +GNTG S+G+V+  + E                   N
Sbjct: 360 TDALGVQWAVDARGSRGGAGGVNFGNTGISVGSVLNAINE-------------------N 400

Query: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472
           E      D            GA + I    + ALI A+S++S SN+LS+PS+  +DN EA
Sbjct: 401 EIPDNLPD------------GAIIGIGTRSFGALITALSSNSKSNLLSTPSLLTLDNQEA 448

Query: 473 SFIVGEEVPVITGS--TAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN 530
             +VG+ VP  TGS  T  +  +NPF T++R+++G+ LKV P INEG +++L IEQE+S+
Sbjct: 449 EILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISS 508

Query: 531 VLGANG----AVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLG 586
           +  +      AVD+   KR + ++++ +DGQ++VLGGLI +    + +KVPLLGDIPLLG
Sbjct: 509 IAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNAKVPLLGDIPLLG 568

Query: 587 QLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDAS 646
            LFRST     K+NLMVF++PT+IRD      ++ +KY+ IR  +           D AS
Sbjct: 569 ALFRSTQETHIKRNLMVFLRPTVIRDRAGLAALSGKKYSDIRVIE----------TDSAS 618

Query: 647 VPVLP 651
             +LP
Sbjct: 619 PTILP 623