Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., type II and III secretion system protein:NolW-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  119 bits (299), Expect = 4e-31
 Identities = 100/354 (28%), Positives = 162/354 (45%), Gaps = 46/354 (12%)

Query: 292 AEKGTGQPTTSKRNEVM--IAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEAL 349
           ++ G+G    SK  +    I A   +N L++         +   I +LD    QV IE  
Sbjct: 452 SQDGSGSSGASKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETR 511

Query: 350 IVEMAEGDGINLGVQW--GSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNN 407
           I+E+     +++GVQW  G L        GN+G + GNV                     
Sbjct: 512 ILEVKLTGELDMGVQWYLGRLA-------GNSGTT-GNV--------------------- 542

Query: 408 NFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVM 467
                 T  ++G      +AL+S      S    +    + A+  +  + +LS+PS+ VM
Sbjct: 543 ----TNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVM 598

Query: 468 DNGEASFIVGEEVPVI-TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQ 526
           +N +A   VG+ +P+  T     +N      +V+  + G+ L VVP+IN G  V ++I+Q
Sbjct: 599 NNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQ 658

Query: 527 EVSNVLGANGAVDV----RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDI 582
           +VS+   ++G  D     R + R + T V  Q GQ ++LGGLI +   E+ + VP LG I
Sbjct: 659 QVSDA-DSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRI 717

Query: 583 PLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAE 636
           P L  LF +TS   ++  L+V I P +I     A  +T    +Y +  QL + E
Sbjct: 718 PGLRWLFGNTSKSKDRTELIVLITPRVITSSSQARQVTD---DYRQQMQLLKPE 768



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 12/262 (4%)

Query: 30  SFKGTDIQEFIN-IVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFA 88
           +F    IQ  IN I+G  L +   +   V+G V   +   +N++Q  S   ++L     A
Sbjct: 109 NFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILETLLSWTDNA 168

Query: 89  VVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLID 148
           +++  N  + +  ++      +P +   + + G  +  ++  ++ +S  E+  LL+    
Sbjct: 169 MIKQGNRYVILPSNQAVAGKLVPEMRVAQPSAG--MSARLFPLRYISATEMQKLLKPF-- 224

Query: 149 NAGAGNVVHYDPA-NIILITGRAAVVNRLAEIIRR--VDQAGDKEIEVVELNNASAAEMV 205
            A     +  DPA N++ + G    +    + I    VD      + V  L  AS  E+ 
Sbjct: 225 -ARENAFLLVDPARNVLSLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGEL- 282

Query: 206 RIVEALNKTTDAQNTPEFLKPKFVADERTNSIL-ISGDPKVRERLKRLIKQLDVEMAAKG 264
            + E           P     +F+  ERTNS++ IS  P+    +   I  +D     + 
Sbjct: 283 -MPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQPEYLHEVGEWIHTIDEGGGNEP 341

Query: 265 NNRVVYLKYAKAEDLVEVLKGV 286
              V  ++  KA DL + L+ +
Sbjct: 342 QMYVYDVRNMKATDLAKYLRQI 363