Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 718 a.a., type II and III secretion system protein:NolW-like protein:NolW-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  121 bits (304), Expect = 1e-31
 Identities = 101/387 (26%), Positives = 169/387 (43%), Gaps = 50/387 (12%)

Query: 235 NSILISGDPKVRERLKRLIKQL-DVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAE 293
           N +L++   ++  R ++ ++ L  +   A     ++ + YAKA D+ ++ + V+      
Sbjct: 366 NVLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAESKA 425

Query: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEM 353
              G  T   R          TN+++    Q+ ++ +  ++ QLDI   QV+IEA IVE 
Sbjct: 426 DERGSITVDDR----------TNNIIAYQTQERLDELRRIVSQLDIPVRQVMIEARIVEA 475

Query: 354 AEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNE 413
                  LGV+WG          G+T  S           K TT     Y  +NN   +E
Sbjct: 476 NVDYNKQLGVRWG----------GSTNTS--------GSGKWTT-----YGLDNN--GDE 510

Query: 414 TTTTKGDYTKLASALS-SIQGAAVSIAMGDWT------ALINAVSNDSSSNILSSPSITV 466
              T G+ T     +     GA   I +G  T        ++A+    +  I+S P +  
Sbjct: 511 AGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVT 570

Query: 467 MDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQ 526
            D   A  + G E+P    S++G+       TV  KE  + L+V PQI   N + + ++ 
Sbjct: 571 SDKETAKILKGTEIPYQESSSSGAT------TVSFKEASLSLEVTPQITPDNRIIMEVKV 624

Query: 527 EVSNVLGANGAVDVR-FAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLL 585
                   N  + V    K ++N  V++ DG+ +V+GG+      +   KVP LGD+P L
Sbjct: 625 TKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYL 684

Query: 586 GQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           G+LFR       K  L+VF+ P I+ +
Sbjct: 685 GRLFRRDVVSESKSELLVFLTPRIMNN 711



 Score = 40.0 bits (92), Expect = 4e-07
 Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 9/112 (8%)

Query: 147 IDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVR 206
           +D    GNV+   PA+ I     AA   +  E ++++ +      E++++N A AA++ +
Sbjct: 359 LDKRKVGNVLLVAPADEI-----AARERQELESLKQIAELAPLRRELLQVNYAKAADIAK 413

Query: 207 IVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDV 258
           + +++   T A++  +  +     D+RTN+I+     +  + L+R++ QLD+
Sbjct: 414 LFQSV---TSAESKADE-RGSITVDDRTNNIIAYQTQERLDELRRIVSQLDI 461