Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., type IV pilus biogenesis protein PilQ (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (340), Expect = 6e-36
 Identities = 105/378 (27%), Positives = 186/378 (49%), Gaps = 51/378 (13%)

Query: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304
           VRE ++ L  Q +V+  A   +  + + YAKA D+ E+LK    +L +++G+        
Sbjct: 351 VRESME-LRNQQEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRGS-------- 401

Query: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364
               +A    TN+L++    + +  +  +I  LDI   QVLIE+ +V + +    +LG++
Sbjct: 402 ----VAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIR 457

Query: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKL 424
           WG  +     Q G  G S      G  E  ++     +   ++    N    T       
Sbjct: 458 WGVTD-----QQGTKGTS------GSLEGAESIAGGVIPAISDRLNVNLPAPTNA----- 501

Query: 425 ASALSSIQGAAVSIAMGDWTAL-INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 483
               +SI      +A G    + ++A+  ++   I++SP IT  +   A    G E+P +
Sbjct: 502 ----ASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYV 557

Query: 484 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE-------QEVSNVLGANG 536
           + S++GS       TV+ K+  + L+V PQI   N V L++E       + V    G   
Sbjct: 558 SASSSGST------TVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAV 611

Query: 537 AVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQV 596
           A+D +    ++ T V+V +G+ +VLGG+  +  +   SKVP+LGDIPL+G LFR+TS + 
Sbjct: 612 AIDTQ----RIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKN 667

Query: 597 EKKNLMVFIKPTIIRDGV 614
           E++ L++F+ P I+ + +
Sbjct: 668 ERQELLIFVTPKIVTEKI 685



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 16/190 (8%)

Query: 147 IDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVR 206
           +D    GN++   PA  + +     + N+     + V +      E +++N A A ++  
Sbjct: 332 LDKRIEGNILMVAPAEELAVRESMELRNQ-----QEVQELAPLYSEYMQINYAKATDIAE 386

Query: 207 IVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEM-AAKGN 265
           ++++   +  +       +     DERTN++L+    +    ++R+I+ LD+ +      
Sbjct: 387 LLKSEGSSLLSD------RGSVAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIE 440

Query: 266 NRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEV--MIAAHADTNSLVLTAP 323
           +R+V +K   AEDL  +  GV++  Q  KGT        +    +I A +D  ++ L AP
Sbjct: 441 SRMVTVKDNVAEDL-GIRWGVTDQ-QGTKGTSGSLEGAESIAGGVIPAISDRLNVNLPAP 498

Query: 324 QDIMNAMLEV 333
            +  +    V
Sbjct: 499 TNAASIAFHV 508