Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., MSHA biogenesis protein MshL (RefSeq) from Shewanella amazonensis SB2B

 Score =  110 bits (275), Expect = 2e-28
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 47/286 (16%)

Query: 343 QVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAV 402
           QV++EA ++E+   DG   G+QW  + +GS +  GNT              K    T A 
Sbjct: 287 QVILEAKVLEVTLSDGYQQGIQWNKI-AGSALADGNT--------------KINFATSAG 331

Query: 403 YDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSP 462
            +  N               +++SAL  +   ++SI   D+ A+IN +      ++LSSP
Sbjct: 332 NEFGN---------------QISSALGGV--TSLSIIGSDFDAMINLLDTQGDVDVLSSP 374

Query: 463 SITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV-----GIKLKVVPQINEG 517
            +T  +N +A   VG++   +T  ++ +       T    E+     GI L V PQI+  
Sbjct: 375 RVTASNNQKAVIKVGKDEYFVTDVSSTTVAGTTPVTSPEVELTPFFSGIALDVTPQIDGQ 434

Query: 518 NSVQLNIEQEVSNVLG-------ANGAVDVRFAK---RQLNTSVMVQDGQMLVLGGLIDE 567
            +V L++   V +V         +N  +++  A+   R+ +T +    G ++V+GGL+  
Sbjct: 435 GNVLLHVHPSVIDVKEQTKTIKISNSDLELPLAQSEIRESDTVIKAMSGDVVVIGGLMKS 494

Query: 568 RALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDG 613
            +LE  SKVPLLGDIP LG+ F + S  V K  L++ +KPT++  G
Sbjct: 495 ESLELVSKVPLLGDIPFLGEAFTNRSQSVRKTELVILLKPTVVVSG 540