Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  691 bits (1782), Expect = 0.0
 Identities = 363/667 (54%), Positives = 487/667 (73%), Gaps = 10/667 (1%)

Query: 11  LLAGSLLSTPL----AMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSF 66
           L+AG++L +P     A   + + SFK  +IQEFIN VG+ L KTIIVDP++RGK++VRS+
Sbjct: 14  LVAGTVLLSPAIAWSASNEQLAPSFKNAEIQEFINTVGKRLNKTIIVDPTIRGKINVRSY 73

Query: 67  DTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVIT 126
           D L E+QY+ FFL+VL+VYG+AVVEM+NGVLKVIK KDAKTS I V        GDE++T
Sbjct: 74  DNLTEDQYFQFFLNVLQVYGYAVVEMENGVLKVIKDKDAKTSNIRVADDSAPGLGDELVT 133

Query: 127 QVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQA 186
           ++V + N   ++L+PLLRQL DNAG GNVV+YDP+N++++TGRAAVVN+L EI++RVD+ 
Sbjct: 134 RIVPLYNSEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAVVNKLVEIVKRVDKQ 193

Query: 187 GDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVR 246
           GD E+ VV L +ASA+EMVRI++ L + +  Q       PK VADER N+++ISGD K R
Sbjct: 194 GDTEVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQAPKVVADERINAVVISGDEKSR 253

Query: 247 ERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTG--QPTTSKR 304
           +R+  L+K+LD E A+ GN +V YL+YAKAEDLVEVL G ++ L+  K  G  Q +  +R
Sbjct: 254 QRVVELVKRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEESKDNGAQQASGKRR 313

Query: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364
           +++ I AH DTN+LV++A  D M  +  VI QLDIRRAQVL+EA+IVE+AEGD +  GVQ
Sbjct: 314 SQINIMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQ 373

Query: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAK-DTTQTKAVYDTNNNFLRNETTTTKGDYTK 423
           W + ESG   Q+ N G +IG +  G+ +A+ +        D N N + ++    +GD T 
Sbjct: 374 WAT-ESGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITL 432

Query: 424 LASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 483
           LA AL  + G A  +AMGD+ ALI AVS+D++SN+L++PSIT +DN EA+FIVG+EVPV+
Sbjct: 433 LAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVL 492

Query: 484 TGSTAGSN-NDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRF 542
           TG+   SN N NPFQTV+RKEVG+KLKV PQINEGN+V+L IEQEVS + G  G VDV F
Sbjct: 493 TGAQNSSNGNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGINGKTG-VDVTF 551

Query: 543 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 602
           A R+L T+VM   GQ++VLGGLI+E   ES  KVP+LGDIPLLG LF+S+SS  +KKNLM
Sbjct: 552 ATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLM 611

Query: 603 VFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHSPE 662
           VFIKPTIIRDG+T +GI  RKYNY RA QL + E+G+ L+ + SVPVL ++   +   PE
Sbjct: 612 VFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQERGVNLMPNTSVPVLEEWDQSQHLPPE 671

Query: 663 IQAFIEQ 669
           +   +++
Sbjct: 672 VNDILDR 678