Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., pilus (MSHA type) biogenesis protein MshL (RefSeq) from Shewanella loihica PV-4

 Score =  101 bits (251), Expect = 1e-25
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 49/283 (17%)

Query: 343 QVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAV 402
           QV++EA ++E+   DG   G+ W S+      Q GN      ++  G   A D       
Sbjct: 289 QVILEAKVLEVTLSDGYQQGIHWESVLG----QSGNN-----SIEFGTSPAPDGL----- 334

Query: 403 YDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSP 462
                           GD   + SA+  I   ++ I   D++ +IN +      ++LSSP
Sbjct: 335 ----------------GDV--ITSAIGGI--TSLQIKGKDFSTMINLLDTQGDVDVLSSP 374

Query: 463 SITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV-----GIKLKVVPQINEG 517
            +T  +N +A   VG +   +T  ++ +       T    E+     GI L V PQI+E 
Sbjct: 375 RVTASNNQKAVIKVGRDEYFVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDEE 434

Query: 518 NSVQLNIEQEVSNVLGANGAVDVRFAK----------RQLNTSVMVQDGQMLVLGGLIDE 567
            SV L+I   V ++   N ++ V  +           R+ +T +    G ++V+GGL+  
Sbjct: 435 GSVLLHIHPSVIDIKEQNKSIKVSDSTLELPLAQSEIRESDTVIKANTGDVVVIGGLMKS 494

Query: 568 RALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
             +E  SKVPLLGDIP LG+ F + S+ + K  L++ +KPT++
Sbjct: 495 ENIELISKVPLLGDIPFLGEAFTNRSNSLRKTELVILLKPTVV 537