Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella loihica PV-4

 Score =  137 bits (344), Expect = 2e-36
 Identities = 108/376 (28%), Positives = 186/376 (49%), Gaps = 59/376 (15%)

Query: 250 KRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMI 309
           + L  Q +V+  A   +  + + YAKA D+ E+LKG   +L + +GT            +
Sbjct: 352 QELKNQQEVKELAPLYSEYLQINYAKATDIAELLKGDDASLLSARGT------------V 399

Query: 310 AAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLE 369
           A    TN+L++   ++ +  +  ++  LDI   QVLIE+ +V + +    +LG++WG  +
Sbjct: 400 AVDDRTNTLLVKDTEESLENIHRLVEVLDIPIRQVLIESRMVTVKDDVSEDLGIKWGITD 459

Query: 370 SGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDY--TKLASA 427
                Q G+ G S       LE A D              + N      GD     L +A
Sbjct: 460 -----QQGSKGTSGS-----LEGAND--------------IANGVVPDIGDRLNVNLPAA 495

Query: 428 LSSIQGAAVSIA-MGDWTAL---INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 483
           +++    A  +A + D T L   ++A+  +S   I++SP IT  +   A    G E+P +
Sbjct: 496 VANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITTSNQKAAYIEQGVEIPYV 555

Query: 484 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE-------QEVSNVLGANG 536
             +++G+       TV  K+  + L+V PQI   N V L++E       + V   LG   
Sbjct: 556 ESASSGA------ATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAV 609

Query: 537 AVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQV 596
           ++D +    ++ T V+V  G+ +VLGG+  ++ +   SKVP+LGDIP LG LFR+T+ + 
Sbjct: 610 SIDTQ----RIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKN 665

Query: 597 EKKNLMVFIKPTIIRD 612
           E++ L++F+ P II +
Sbjct: 666 ERQELLIFVTPKIISE 681



 Score = 35.8 bits (81), Expect = 7e-06
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 147 IDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVR 206
           +D    GN++   PA  I I     + N+     + V +      E +++N A A ++  
Sbjct: 329 LDKRIEGNILMVAPAEEIAIRESQELKNQ-----QEVKELAPLYSEYLQINYAKATDIAE 383

Query: 207 IVEALNKTT-DAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEM-AAKG 264
           +++  + +   A+ T          D+RTN++L+    +  E + RL++ LD+ +     
Sbjct: 384 LLKGDDASLLSARGT-------VAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIRQVLI 436

Query: 265 NNRVVYLKYAKAEDLVEVLKGVSENLQAEKGT 296
            +R+V +K   +EDL  +  G+++  Q  KGT
Sbjct: 437 ESRMVTVKDDVSEDL-GIKWGITDQ-QGSKGT 466