Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., MSHA-type pilus biogenesis protein MshL from Dechlorosoma suillum PS

 Score =  102 bits (253), Expect = 6e-26
 Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 38/328 (11%)

Query: 301 TSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGIN 360
           T     V+I +H+    LV   P ++ N    +     I   QV++EA I+++A  D   
Sbjct: 236 TEDGRSVIINSHSGV-ILVRAMPGELRNVEQYLRATQAIIERQVMLEAKIIDVALSDAYQ 294

Query: 361 LGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGD 420
            G+ W S    + I     G S+                     ++N  +R  T    G 
Sbjct: 295 SGINWASFSGHTTIGVAANGTSLS--------------PSGALTSDNASIRPGTDGNLG- 339

Query: 421 YTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEE- 479
                 ++ +     ++     + AL+N +    ++ +LSSP I  ++N +A   VG + 
Sbjct: 340 ------SVGTNGFFGLAFRTKSFAALLNFLETQGNTQVLSSPRIATLNNQKAVLKVGTDE 393

Query: 480 --VPVITGSTAGSNNDNPFQTVDRKEV--GIKLKVVPQINEGNSVQLNIEQEVSNV---- 531
             V  ++ +T  S       TV  +    GI L V PQINE   + L+I   +S V    
Sbjct: 394 YYVTNVSSTTIASTTTTTTPTVTLQPFFSGIALDVTPQINESGLITLHIHPSISVVTEKN 453

Query: 532 ----LGANGAVDVRFAKRQLNTS---VMVQDGQMLVLGGLIDERALESESKVPLLGDIPL 584
               LG + A+ +  A  ++N S   V V+DG+++ +GGL+ +   ++ + +P +  +P+
Sbjct: 454 KSLSLGTDLAMTLPLATSRINESDTIVRVRDGEIVAIGGLMTQDQSDTSNGLPGIHQVPV 513

Query: 585 LGQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           LG LF   S  + K+ L++ +KPT+I++
Sbjct: 514 LGNLFGQKSKALNKRELVILLKPTVIQN 541