Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., MSHA biogenesis protein MshL (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (263), Expect = 4e-27
 Identities = 77/283 (27%), Positives = 140/283 (49%), Gaps = 50/283 (17%)

Query: 343 QVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAV 402
           QV++EA I+E+   DG   G+QW            N    +GN                 
Sbjct: 289 QVILEAKILEVTLSDGYQQGIQWD-----------NVLGHVGN----------------- 320

Query: 403 YDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSP 462
             TN NF    T+   G   K+ S+L  +   ++SI   D+  +I+ +      ++LSSP
Sbjct: 321 --TNINF---GTSAGTGLSDKITSSLGGV--TSLSIKGSDFNTMISLLDTQGDVDVLSSP 373

Query: 463 SITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV-----GIKLKVVPQINEG 517
            +T  +N +A   VG +   +T  ++ +       T  + E+     GI L V PQI++ 
Sbjct: 374 RVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKD 433

Query: 518 NSVQLNI-------EQEVSNVLGANGAVDVRFAK---RQLNTSVMVQDGQMLVLGGLIDE 567
            +V L++       +++  ++  +N ++++  A+   R+ +T +    G ++V+GGL+  
Sbjct: 434 GNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKS 493

Query: 568 RALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
             +E  S+VPLLGDIP +G+LF++ S Q +K  L++ +KPT++
Sbjct: 494 ENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVV 536