Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., type IV pilus biogenesis protein PilQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (338), Expect = 1e-35
 Identities = 105/374 (28%), Positives = 187/374 (50%), Gaps = 55/374 (14%)

Query: 250 KRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMI 309
           + L  + +V+  A   +  + + YAKA D+ E+LKG   +L + +G+            +
Sbjct: 353 QNLKNKQEVKELAPLYSEYLQINYAKATDIAELLKGADSSLLSPRGS------------V 400

Query: 310 AAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLE 369
           A    TN++++    +I+  +  ++  LDI   QVLIE+ +V + +    +LG++WG  +
Sbjct: 401 AVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVLIESRMVTVKDDVSEDLGIRWGVTD 460

Query: 370 SGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALS 429
                Q GN G S       LE A D    K V   +N    N           L +A++
Sbjct: 461 -----QQGNKGTSGS-----LEGAGDIANGK-VPSLDNRLNVN-----------LPAAVT 498

Query: 430 SIQGAAVSIA-MGDWTAL---INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITG 485
           +    A  +A + D T L   ++A+  ++   I++SP IT  +   A    G E+P +  
Sbjct: 499 NPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVQS 558

Query: 486 STAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE-------QEVSNVLGANGAV 538
           +++G+ +      V  K+  + L+V PQI   N V L++E       + V    G   A+
Sbjct: 559 TSSGATS------VTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAI 612

Query: 539 DVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEK 598
           D +    ++ T V+V +G+ +VLGG+  +  +   SKVP+LGDIPL+G LFR+T+ + E+
Sbjct: 613 DTQ----RIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNER 668

Query: 599 KNLMVFIKPTIIRD 612
           + L++F+ P I+ +
Sbjct: 669 QELLIFVTPKIVNE 682



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 47/266 (17%)

Query: 63  VRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDN-------GVLKVIKSKDAKTSAIPVLSG 115
           V++F+T  ++      + V   Y F   + DN        V +V+ +KD K      LS 
Sbjct: 217 VKNFETFKDDLTARILVDVTGNYEFNFKQEDNLFILSINKVERVVATKDIKKYNGKTLSL 276

Query: 116 EERANGDEVITQVVAVKN-------------VSVR-------ELSPLLRQL--IDNAGAG 153
             +      + Q++A  N             +++R       +   L+ Q   +D    G
Sbjct: 277 NFQNISVRTVLQIIADYNNFNLVTSDSVEGDITLRLDDVPWDQALDLILQTKGLDKRIEG 336

Query: 154 NVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNK 213
           N++   P+  + I     + N+     + V +      E +++N A A ++  +++  + 
Sbjct: 337 NILMVAPSEELAIRESQNLKNK-----QEVKELAPLYSEYLQINYAKATDIAELLKGADS 391

Query: 214 TTDAQNTPEFLKPK--FVADERTNSILISGDPKVRERLKRLIKQLDVEM-AAKGNNRVVY 270
           +         L P+     DERTN++L+    ++ E + RL++ LD+ +      +R+V 
Sbjct: 392 S--------LLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVLIESRMVT 443

Query: 271 LKYAKAEDLVEVLKGVSENLQAEKGT 296
           +K   +EDL  +  GV++  Q  KGT
Sbjct: 444 VKDDVSEDL-GIRWGVTDQ-QGNKGT 467