Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 704 a.a., general secretion pathway protein D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  714 bits (1844), Expect = 0.0
 Identities = 366/658 (55%), Positives = 488/658 (74%), Gaps = 6/658 (0%)

Query: 15  SLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQY 74
           ++L++    + +++A+FKGTDIQEFINIVG+NL KTIIVDP++RGK++VRS+D LN+EQY
Sbjct: 19  TMLTSQFVWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQY 78

Query: 75  YSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNV 134
           Y FFL+VL+VYG+A+VEM+N V+KVIK KDAKT+AI V +  +   GDE++T++VA+ N 
Sbjct: 79  YQFFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGLGDEMVTRIVALYNT 138

Query: 135 SVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVV 194
             ++L+PLLRQL DNAG GNVV+YDP+N+++++GRAAVVN+L EIIRRVD+ GD  ++VV
Sbjct: 139 EAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLSGRAAVVNKLVEIIRRVDKQGDTSVQVV 198

Query: 195 ELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIK 254
            L  ASA EMVRI++ L + T  Q+      PK VADER N++++SGD K R+R+  LI 
Sbjct: 199 PLEYASAGEMVRIIDTLYRATANQSQLPGQAPKVVADERINAVVVSGDEKSRQRVVELIH 258

Query: 255 QLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTT---SKRNEVMIAA 311
           +LD E A+ GN +V YL+YAKAEDLVEVL G ++ L++EK           +RNE+ I A
Sbjct: 259 RLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLESEKDPSAQAAGGGKRRNEINIMA 318

Query: 312 HADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESG 371
           H DTN+LV++A  D M  +  VI QLDIRRAQVL+EA+IVE+AEGD +  GVQW + ++G
Sbjct: 319 HTDTNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWAA-KAG 377

Query: 372 SVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSI 431
              Q+ N G +IG +  G+ +A+D   T     +    +  +   TKGD T LA AL  +
Sbjct: 378 GGTQFNNLGPTIGEIGAGIWQAQDKEGTYITNPSTGEVI-GQNPKTKGDVTLLAQALGKV 436

Query: 432 QGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSN 491
            G A  +AMGD+ AL+ AVS D++SN+L++PSIT +DN EASFIVG+EVP++TGSTA SN
Sbjct: 437 NGMAWGVAMGDFGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSN 496

Query: 492 NDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSV 551
           N NPFQTV+RKEVG+KLKVVPQINEGN+V+L IEQEVS V G N  VD+ FA R+L T+V
Sbjct: 497 NSNPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNG-NTGVDISFATRRLTTTV 555

Query: 552 MVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611
           M   GQ++VLGGLI+E   ES  KVP LGDIP+LG LF+S+SS+  KKNLM+FIKPTIIR
Sbjct: 556 MADSGQIVVLGGLINEEVQESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIR 615

Query: 612 DGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHSPEIQAFIEQ 669
           DGVT +GI  RKYNY RA QL + E+G+ L+ D  VPVL ++       PE+   +E+
Sbjct: 616 DGVTMEGIAGRKYNYFRALQLEQQERGVNLMPDTKVPVLDEWNQSEYLPPEVNDILER 673