Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., type II secretion system protein GspD from Klebsiella michiganensis M5al

 Score =  603 bits (1554), Expect = e-176
 Identities = 316/606 (52%), Positives = 429/606 (70%), Gaps = 28/606 (4%)

Query: 11  LLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLN 70
           L+  +LL  P A A EFSASFKGTDIQEFIN V +NL KT+I+DPSVRG + VRS+D LN
Sbjct: 15  LIFAALLFRPAA-AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLN 73

Query: 71  EEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVA 130
           EEQYY FFLSVL+VYGFAV+ M+NGVLKV++SKDAKT+A+PV S      GDEV+T+VV 
Sbjct: 74  EEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVP 133

Query: 131 VKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKE 190
           + NV+ R+L+PLLRQL DNAG G+VVHY+P+N++L+TGRAAV+ RL  I+ RVD AGD+ 
Sbjct: 134 LTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRS 193

Query: 191 IEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLK 250
           +  V L+ ASAA++V++V  LNK T     P  +    VADERTN++L+SG+P  R+R+ 
Sbjct: 194 VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRII 253

Query: 251 RLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIA 310
            +IKQLD + A +GN +V+YLKYAKA DLVEVL G+S  +Q+EK   +P  +    ++I 
Sbjct: 254 AMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIK 313

Query: 311 AHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLES 370
           AH  TN+L++TA  D+MN +  VI QLDIRR QVL+EA+I E+ + DG+NLG+QW +  +
Sbjct: 314 AHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNA 373

Query: 371 GSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSS 430
           G + Q+ N+G  I   + G                 N + ++ T +     + LASALSS
Sbjct: 374 G-MTQFTNSGLPISTAIAGA----------------NQYNKDGTVS-----SSLASALSS 411

Query: 431 IQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGS 490
             G A     G+W  L+ A+S+ + ++IL++PSI  +DN EA+F VG+EVPV+TGS   +
Sbjct: 412 FNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT-T 470

Query: 491 NNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGA----NGAVDVRFAKRQ 546
           + DN F TV+RK VGIKLKV PQINEG+SV L IEQEVS+V  A    +  +   F  R 
Sbjct: 471 SGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRT 530

Query: 547 LNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIK 606
           +N +V+V  G+ +V+GGL+D+   ++  KVPLLGDIP++G LFRSTS +V K+NLM+FI+
Sbjct: 531 VNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIR 590

Query: 607 PTIIRD 612
           PT+IRD
Sbjct: 591 PTVIRD 596