Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (276), Expect = 1e-28
 Identities = 91/364 (25%), Positives = 172/364 (47%), Gaps = 21/364 (5%)

Query: 250 KRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMI 309
           +R+ +QL           V+ ++YA+A +L + L+G     +  K  G         V++
Sbjct: 170 QRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDEQNKPVGA--------VVV 221

Query: 310 AAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSL- 368
             H  TNSL++ A +D ++ ++ ++  LD  RAQ+L++A IVE       +LG+QWG + 
Sbjct: 222 DTH--TNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDLGIQWGGVG 279

Query: 369 ESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASAL 428
            SG++        + G    G  +  D      V       L  +         K     
Sbjct: 280 RSGNMGDGNRMWVTPGGS--GPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVNKAGKTA 337

Query: 429 SSIQGAAVSIAMGDWTAL-INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGST 487
               G       G+   + ++A+ ++   NILSSPSI+ +DN  A    GE+VP ++ + 
Sbjct: 338 MGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMAFTENGEKVPYVSTNA 397

Query: 488 AGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV-LGANGAVDVRFAKRQ 546
            G         V  ++  ++L++ P + + ++++L ++ +   V L      +    K+Q
Sbjct: 398 QGDRE------VKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKKQ 451

Query: 547 LNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIK 606
             T+++VQDG+ +V+ GL  ER+      +P L D+  +G LF + S   + +++++FI 
Sbjct: 452 TETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFIT 511

Query: 607 PTII 610
           P I+
Sbjct: 512 PAIL 515