Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella sp. ANA-3

 Score =  132 bits (333), Expect = 4e-35
 Identities = 101/374 (27%), Positives = 185/374 (49%), Gaps = 55/374 (14%)

Query: 250 KRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMI 309
           + L  + +V+  A   +  + + YAKA D+ E+LKG   +L + +G+            +
Sbjct: 353 QNLKNKQEVKELAPLYSEYLQINYAKATDIAELLKGADSSLLSPRGS------------V 400

Query: 310 AAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLE 369
           A    TN++++    +I+  +  ++  LDI   QVLIE+ +V + +    +LG++WG  +
Sbjct: 401 AVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVLIESRMVTVKDDVSEDLGIRWGVTD 460

Query: 370 SGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALS 429
                Q G+ G S      G  E   +     V   +N    N           L +A++
Sbjct: 461 -----QQGSKGTS------GTLEGAGSIANGVVPSLDNRLNVN-----------LPAAVT 498

Query: 430 SIQGAAVSIA-MGDWTAL---INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITG 485
           +    A  +A + D T L   ++A+  ++   I++SP IT  +   A    G E+P +  
Sbjct: 499 NPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVQS 558

Query: 486 STAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE-------QEVSNVLGANGAV 538
           +++G+ +      V  K+  + L+V PQI   N V L++E       + V    G   A+
Sbjct: 559 TSSGATS------VTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAI 612

Query: 539 DVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEK 598
           D +    ++ T V+V +G+ +VLGG+  +  +   SKVP+LGDIPL+G LFR+T+ + E+
Sbjct: 613 DTQ----RIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNER 668

Query: 599 KNLMVFIKPTIIRD 612
           + L++F+ P I+ +
Sbjct: 669 QELLIFVTPKIVNE 682



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 147 IDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVR 206
           +D    GN++   P+  + I     + N+     + V +      E +++N A A ++  
Sbjct: 330 LDKRIEGNILMVAPSEELAIRESQNLKNK-----QEVKELAPLYSEYLQINYAKATDIAE 384

Query: 207 IVEALNKTTDAQNTPEFLKPK--FVADERTNSILISGDPKVRERLKRLIKQLDVEM-AAK 263
           +++  + +         L P+     DERTN++L+    ++ E + RL++ LD+ +    
Sbjct: 385 LLKGADSS--------LLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIRQVL 436

Query: 264 GNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGT 296
             +R+V +K   +EDL  +  GV++  Q  KGT
Sbjct: 437 IESRMVTVKDDVSEDL-GIRWGVTDQ-QGSKGT 467