Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., pilus (MSHA type) biogenesis protein MshL (RefSeq) from Shewanella sp. ANA-3

 Score =  103 bits (256), Expect = 3e-26
 Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 50/283 (17%)

Query: 343 QVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAV 402
           QV++EA I+E+   DG   G+QW            N    +GN                 
Sbjct: 290 QVILEAKILEVTLSDGYQQGIQWD-----------NVLGHVGN----------------- 321

Query: 403 YDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSP 462
             TN NF    T+   G   K+ ++L  +   ++SI   D+  +I+ +      ++LSSP
Sbjct: 322 --TNINF---GTSAGAGLSDKITASLGGV--TSLSIKGSDFNTMISLLDTQGDVDVLSSP 374

Query: 463 SITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV-----GIKLKVVPQINEG 517
            +T  +N +A   VG +   +T  ++ +       T  + E+     GI L V PQI++ 
Sbjct: 375 RVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKD 434

Query: 518 NSVQLNI-------EQEVSNVLGANGAVDVRFAK---RQLNTSVMVQDGQMLVLGGLIDE 567
            +V L++       +++  ++  ++ ++++  A+   R+ +T +    G ++V+GGL+  
Sbjct: 435 GNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKS 494

Query: 568 RALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
              E  S+VPLLGDIPL+G+LF++ S Q +K  L++ +KPT++
Sbjct: 495 ENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537