Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  711 bits (1834), Expect = 0.0
 Identities = 363/656 (55%), Positives = 486/656 (74%), Gaps = 4/656 (0%)

Query: 15  SLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQY 74
           ++L++    + +++A+FKGTDIQEFINIVG+NL KTIIVDP++RGK++VRS+D LN+EQY
Sbjct: 19  TMLTSQFVWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQY 78

Query: 75  YSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNV 134
           Y FFL+VL+VYG+A+VEM+N V+KVIK KDAKT+AI V +  +   GDE++T++VA+ N 
Sbjct: 79  YQFFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGLGDEMVTRIVALYNT 138

Query: 135 SVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVV 194
             ++L+PLLRQL DNAG GNVV+YDP+N+++++GRAAVVN+L EI+RRVD+ GD  ++VV
Sbjct: 139 EAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVV 198

Query: 195 ELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIK 254
            L  ASA EMVRI++ L + T  Q       PK VADER N++++SGD K R+R+  LI 
Sbjct: 199 PLEYASAGEMVRIIDTLYRATANQAQLPGQAPKVVADERINAVVVSGDEKSRQRVVELIH 258

Query: 255 QLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKG-TGQPTTSKRNEVMIAAHA 313
           +LD E A+ GN +V YL+YAKAEDLVEVL G ++ L+ EK  + Q    +RNE+ I AH 
Sbjct: 259 RLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPSAQAGGKRRNEINIMAHT 318

Query: 314 DTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSV 373
           DTN+LV++A  D M  +  VI QLDIRRAQVL+EA+IVE+AEGD +  GVQW +   G  
Sbjct: 319 DTNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGT 378

Query: 374 IQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQG 433
            Q+ N G +IG +  G+ +A+D   T     +    +  +   TKGD T LA AL  + G
Sbjct: 379 -QFNNLGPTIGEIGAGIWQAQDKEGTYITNPSTGEVI-GKNPDTKGDVTLLAQALGKVNG 436

Query: 434 AAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNND 493
            A  +AMGD+ AL+ AVS D++SN+L++PSIT +DN EASFIVG+EVP++TGSTA SNN 
Sbjct: 437 MAWGVAMGDFGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNS 496

Query: 494 NPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMV 553
           NPFQTV+RKEVG+KLKVVPQINEGN+V+L IEQEVS V G N  VD+ FA R+L T+VM 
Sbjct: 497 NPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNG-NTGVDISFATRRLTTTVMA 555

Query: 554 QDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDG 613
             GQ++VLGGLI+E   ES  KVP LGDIP+LG LF+S+SS+  KKNLM+FIKPTIIRDG
Sbjct: 556 DSGQIVVLGGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRDG 615

Query: 614 VTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHSPEIQAFIEQ 669
           VT +GI  RKYNY RA QL + E+G+ L+ +  VP+L ++       PE+   +++
Sbjct: 616 VTMEGIAGRKYNYFRALQLEQQERGVNLMPNTQVPILEEWNQSEYLPPEVNDILDR 671