Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., Type IV fimbrial assembly, ATPase PilB from Pseudomonas fluorescens FW300-N2E2

 Score =  356 bits (914), Expect = e-102
 Identities = 189/437 (43%), Positives = 290/437 (66%), Gaps = 9/437 (2%)

Query: 73  ESKLTQVYQR---DSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINA 129
           ++KL+   ++    SS   + M D+  D  D  S+ ++  Q+    +  DD P+++ +N 
Sbjct: 132 DNKLSDAIEKFFESSSTGLEGMGDVDLDGLDIESI-DDSKQDSIGGQDTDDTPVVRFVNK 190

Query: 130 MLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAE 189
           ML +AIK G+SD+H E +EK   +R R DG+LREV  P  +L++ + +R+KVMA LDI+E
Sbjct: 191 MLLDAIKGGSSDLHFEPYEKIYRVRVRTDGILREVARPPIQLANRIAARLKVMASLDISE 250

Query: 190 KRVPQDGRISLRIGG-RAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDN 248
           +R PQDGR+ +R+   +++D RV+T+P+  GE+VV+R+LD ++ ++ + +LG      D 
Sbjct: 251 RRKPQDGRLKMRLSKTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDL 310

Query: 249 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 308
           +   +K+P G+ILVTGPTGSGK+ +LY GL  LN+ + NI T EDP+E +++GI Q  VN
Sbjct: 311 YMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVN 370

Query: 309 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT 368
           PR  + FA+ LR+ LRQDPDV+MVGEIRDLETA+IA++A+ TGHLV+STLHTN+A   + 
Sbjct: 371 PRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLI 430

Query: 369 RLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQ--RKLFDSKKKEPLILYR 426
           RL++MGI  F I++++  ++AQRL R LC  CK+  +  +E   ++ F  +      +Y 
Sbjct: 431 RLQNMGIPGFNIATAVHLIIAQRLARKLCSHCKKAIDIPEETLLKEGFPREHLGTFTIYE 490

Query: 427 ATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRAT-TPSIRDDGLDK 485
             GC +CN+ GY+GR G++E++     LQ LI +E     ++  +R      +R  GL K
Sbjct: 491 PVGCEQCNN-GYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLK 549

Query: 486 VRQGITSLEEVMRVTKE 502
           V QG+TSLEE+ RVTK+
Sbjct: 550 VMQGVTSLEEINRVTKD 566