Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB from Pseudomonas fluorescens FW300-N2E2

 Score =  338 bits (867), Expect = 3e-97
 Identities = 171/389 (43%), Positives = 266/389 (68%), Gaps = 4/389 (1%)

Query: 119 DDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSR 178
           +DA I+ +++ +   A ++ ASDIHIE   +  ++RFR+DGVL  V     +++  +VSR
Sbjct: 203 NDAHIVNIVDWLFQYAFQQRASDIHIEPRREQGTVRFRIDGVLHTVYQFPPQVTMAIVSR 262

Query: 179 VKVMAKLDIAEKRVPQDGRISLRI-GGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLH 237
           +K + ++++AEKR PQDGR+  +   G  V++R+ST+P++ GE++VMR+ D      D  
Sbjct: 263 LKSLGRMNVAEKRKPQDGRVKTKTPDGGEVELRLSTLPTAFGEKMVMRIFDPEVLLKDFD 322

Query: 238 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 297
            LG +A +   ++ + ++P+GIILVTGPTGSGK+TTLY  L++L + E N+ T+EDPIE 
Sbjct: 323 QLGFSADDLRRWQDMTRQPNGIILVTGPTGSGKTTTLYTTLKKLATPEVNLCTIEDPIEM 382

Query: 298 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST 357
                 Q QV   +D++FA G+RA++RQDPD++M+GEIRDLETA++A+QA+LTGHLV+ST
Sbjct: 383 VEASFNQMQVQHNIDLSFAAGVRALMRQDPDIIMIGEIRDLETAEMAIQAALTGHLVLST 442

Query: 358 LHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSK 417
           LHTN A  A++RL ++G+  +LI +++LGV+AQRLVRTLCP CK P   D++  +     
Sbjct: 443 LHTNDAPSAISRLLELGVPHYLIKATVLGVMAQRLVRTLCPQCKAPLTLDEDDWQTLTRP 502

Query: 418 KKEPL--ILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKH-IRAT 474
            + PL     +A GC +C   GYRGR G++E++ + D+++ LIH +    A+ +   +  
Sbjct: 503 WQAPLPSNAQQAVGCLECRDTGYRGRAGVYEIMQLTDSVKALIHPDTDLLAVRRQAFKEG 562

Query: 475 TPSIRDDGLDKVRQGITSLEEVMRVTKES 503
             S+R  G  KV  G+T++EEV+RVT +S
Sbjct: 563 MRSLRLSGAQKVAAGLTTVEEVLRVTPQS 591