Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., type II secretion system protein E:General secretory system II, protein E, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  338 bits (867), Expect = 3e-97
 Identities = 186/496 (37%), Positives = 307/496 (61%), Gaps = 16/496 (3%)

Query: 17  LPFSFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELSQAEFESKL 76
           + ++FA R K +L    D    +I    P       +   V+K   + +  + A+ +   
Sbjct: 103 MSYAFAQRHK-ILAVAVDRESVTIASAQPYVRSWEADLAHVLKLQIKRVVANPADIQRMA 161

Query: 77  TQVYQ-----RDSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINAML 131
            + ++       +S + Q M ++G    +F  L +    +++     +DA I+ +++ + 
Sbjct: 162 MEFFRLAKSVSGASASEQKMSNMG----NFEQLLKLGASDQE--PDANDAHIVNIVDWLF 215

Query: 132 GEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKR 191
             A ++ ASDIHIE   +  ++RFR+DGVL  V     ++   +VSR+K + ++++AEKR
Sbjct: 216 QYAFQQRASDIHIEPRREQGTVRFRIDGVLHNVYQFPAQVIMAIVSRLKSLGRMNVAEKR 275

Query: 192 VPQDGRISLRIG-GRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFR 250
            PQDGR+       R V++R+ST+P++ GE++VMR+ D      D   LG ++ +   ++
Sbjct: 276 KPQDGRVKTTTPENREVELRLSTLPTAFGEKMVMRIFDPEVLLKDFDQLGFSSDDLRRWQ 335

Query: 251 RLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 310
            + ++P+GIILVTGPTGSGK+TTLY  L++L +SE N+ T+EDPIE       Q QV   
Sbjct: 336 EMTRQPNGIILVTGPTGSGKTTTLYTTLKKLATSEVNLCTIEDPIEMVEPAFNQMQVQHN 395

Query: 311 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRL 370
           +D++FA G+RA++RQDPD++M+GEIRDLETA++A+QA+LTGHLV+STLHTN A  A++R+
Sbjct: 396 IDLSFAAGVRALMRQDPDIIMIGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPSAISRM 455

Query: 371 RDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLI--LYRAT 428
            ++G+  +L+ +++LGV+AQRLVRTLCP CK P   ++   +      + P+    ++A 
Sbjct: 456 LELGVPHYLLKATILGVMAQRLVRTLCPHCKAPINLNETDWQTLTRPWQAPVPPGAHQAV 515

Query: 429 GCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKH-IRATTPSIRDDGLDKVR 487
           GC +C   GYRGR G++E++++ D ++ LI ++    AM +   +  T S+R  G  KV 
Sbjct: 516 GCVECRDTGYRGRAGVYEIMVMSDNIKALISADLDLTAMRRQAFKEGTRSLRLSGAQKVS 575

Query: 488 QGITSLEEVMRVTKES 503
            G+T+LEEV+RVT +S
Sbjct: 576 AGLTTLEEVLRVTPQS 591