Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., ATPase from Synechococcus elongatus PCC 7942

 Score =  349 bits (896), Expect = e-100
 Identities = 214/517 (41%), Positives = 309/517 (59%), Gaps = 34/517 (6%)

Query: 17  LPFSFANRFKLV-LDWNEDFSQASIYYLAPLSMEALVETKRVVK---HAFQLIELSQAEF 72
           +P     R +LV L+ +E   +A +  + P +++AL E  R+++   +  Q + ++  ++
Sbjct: 107 VPIETCRRHQLVPLERHEAPPRAVVAMVDPNNLDALDELNRLLRPRGYTLQRLVITLEDY 166

Query: 73  ESKLTQVYQRDSSEARQLME--DIGADSD-----DFFSLAEELPQNEDL---LESEDDAP 122
           E +L   Y     E +Q M+   +G  S+     D   L E   Q EDL   L+  DDAP
Sbjct: 167 E-RLIAGYLDQQLERQQAMQAKQLGDFSEELANLDNLELTEISVQEEDLAKALQEADDAP 225

Query: 123 IIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAP-SRKLSSLLVSRVKV 181
           I+ L N +L +A+ EGASDIH+E  E  L +R R DGVL +      +K+   L+SR+K+
Sbjct: 226 IVSLANKILLKALTEGASDIHVEPQEDGLRVRLRRDGVLHQEFGTLPKKIQPALISRLKI 285

Query: 182 MAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGM 241
           MA LDIAE+RVPQDGRI     GR +D RV+++PS  GE++ MRLLD +AT+L L  L  
Sbjct: 286 MANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPSHFGEKICMRLLDNSATQLGLDQLIT 345

Query: 242 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG 301
                   R +  RP+G+ILVTGPTGSGKST+LY+ L E N    NI T EDPIE+ + G
Sbjct: 346 DEEALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIEYTLPG 405

Query: 302 IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 361
           + Q QV     M FA  LRA +RQDPDV++VGE RDLETA+ A++A+LTGHLV++TLH N
Sbjct: 406 LTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHAN 465

Query: 362 TAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQ--RKLFDSKKK 419
            A  A+ RL +MG+EP+L+S SL+GV++QRL+R +CPDC+ PY  + E+  R    + ++
Sbjct: 466 DAPSAIARLSEMGVEPYLVSGSLIGVVSQRLMRRVCPDCRVPYTPNPEELGRYGLSASQE 525

Query: 420 EPLILYRATG---------------CPKCNHKGYRGRTGIHELLLVDDALQELIHSE-AG 463
             +  Y+A                 C  C   GY+GR G++E++ V++ LQ  I+     
Sbjct: 526 LDVTFYKAKTLTSDSLAQARSQGQVCRTCRGTGYKGRVGVYEVMRVNEVLQVAINQGLPT 585

Query: 464 EQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRVT 500
           E+  E  +     ++    L+ VRQG T+ EEV RVT
Sbjct: 586 ERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVT 622